Publications

2024, June

Kenneth Timmis et al., Eric S. Boyd.  A CONCEPT FOR INTERNATIONAL SOCIETALLY RELEVANT MICROBIOLOGY EDUCATION AND MICROBIOLOGY KNOWLEDGE PROMULGATION IN SOCIETY.

Luke F. Domanico, Gary P. Dunn, Oren Kobiler, Matthew P. Taylor.  A DUAL FLUORESCENT HERPES SIMPLEX VIRUS TYPE 1 RECOMBINANT REVEALS DIVERGENT OUTCOMES OF NEURONAL INFECTION.

Clayton W. Winkler, Alyssa B. Evans, Aaron B. Carmody, Justin B. Lack, Tyson A. Woods, Karin E. Peterson. C-C MOTIF CHEMOKINE RECEPTOR 2 AND 7 SYNERGISTICALLY CONTROL INFLAMMATORY MONOCYTE RECRUITMENT BUT THE INFECTING VIRUS DICTATES MONOCYTE FUNCTION IN THE BRAIN.

Fu Chai, Hajime Fujii, Giang N T Le, Chang Lin, Keisuke Ota, Karl Matthew Lin, Lam M T Pham, Peng Zou, Mikhail Drobizhev, Yusuke Nasu, Takuya Terai, Haruhiko Bito, Robert E Campbell. DEVELOPMENT OF AN MIRFP680-BASED FLUORESCENT CALCIUM ION BIOSENSOR USING END-OPTIMIZED TRANSPOSONS.

Jennifer L Goff, Lauren M Lui, Torben N Nielsen, Farris L Poole, Heidi J Smith, Kathleen F Walker, Terry C Hazen, Matthew W Fields, Adam P Arkin, Michael W. W. Adams.  MIXED WASTE CONTAMINATION SELECTS FOR A MOBILE GENETIC ELEMENT POPULATION ENRICHED IN MULTIPLE HEAVY METAL RESISTANCE GENES.

Maria C Fernandes-Martins, Daniel R Colman, Eric S Boyd.  SULFIDE OXIDATION BY MEMBERS OF THE SULFOLOBALES.

Majd Alsoubani, Jennifer K Chow, Angie Mae Rodday, Laura A McDermott, Seth T Walk, David M Kent, David R Snydman.  THE CLINICAL EFFECTIVENESS OF FIDAXOMICIN COMPARED TO VANCOMYCIN IN THE TREATMENT OF CLOSTRIDIOIDES DIFFICILE INFECTION, A SINGLE CENTER REAL-WORLD EXPERIENCE.

William S. Henriques, Janet M. Young, Artem Nemudryi, Anna Nemudraia, Blake Wiedenheft, Harmit S. Malik.  THE DIVERSE EVOLUTIONARY HISTORIES OF DOMESTICATED METAVIRAL CAPSID GENES IN MAMMALS.

2024, May

Cody S Clements, Zoe A Pratte, Frank J Stewart, Mark E Hay. BIODIVERSITY OF MACROALGAE DOES NOT DIFFERENTIALLY SUPPRESS CORAL PERFORMANCE: THE OTHER SIDE OF A BIODIVERSITY ISSUE.

Abhi Aggarwal, Smrithi Sunil, Imane Bendifallah, Michael Moon, Mikhail Dribizhev, Landon Zarowny, Jihong Zheng, Sheng-Yi Wu, Alexander W. Lohman, Alison G. Tebo, Valentina Emiliani, Kaspar Podgorski, Yi Shen, Robert E. Campbell. BLUE-SHIFTED GENETICALLY ENCODED CA2+ INDICATOR WITH ENHANCED TWO-PHOTON ABSORPTION.

Kristopher Hunt et al., Katherine J. Davis, Matthew W. Fields. CONTRIBUTION OF MICROORGANISMS WITH THE CLADE II NITROUS OXIDE REDUCTASE TO SUPPRESSION OF SURFACE EMISSIONS OF NITROUS OXIDE

Letizia Crocetti, Francesca Catarzi, Maria Paola Giovannoni, Claudia Vergelli, Gianluca Bartolucci, Marco Pallecchi, Paola Paoli, Patrizia Rossi, Martina Lippi, Igor A. Schepetkin, Mark T. Quinn, Gabriella Guerrini.  EBSELEN ANALOGUES WITH DUAL HUMAN NEUTROPHIL ELASTASE (HNE) INHIBITORY AND ANTIRADICAL ACTIVITY.

Vamseedhar Rayaprolu, Heini M Miettinen, William D Baker, Victoria C Young, Matthew Fisher, Gwendolyn Mueller, William O Rankin, John T Kelley, William J Ratzan, Lee Min Leong, Joshua A Davisson, Bradley J Baker, Susy C Kohout.  HYDROPHOBIC RESIDUES IN S1 MODULATE ENZYMATIC FUNCTION AND VOLTAGE SENSING IN VOLTAGE-SENSING PHOSPHATASE.

2024, April

Hanbin Zhang, Gleb D. Lesnov, Oksana M. Subach, Wenhao Zhang, Tatyana P. Kuzmicheva, Anna V. Vlaskina, Valeriya R. Samygina, Liangyi Chen, Xianxin Ye, Alena Yu. Nikolaeva, Azat Gabdulkhakov, Stavrini Papadaki, Wenming Qin, Valentin Borschevskiy, Maxim M. Perfilov, Alexey S. Gavrikov, Mikhail Drobizhev, Alexander S. Mishin, Kiryl D. Piatkevich, Fedor V. Subach. BRIGHT AND STABLE MONOMERIC GREEN FLUORESCENT PROTEIN DERIVED FROM STAYGOLD.

Cecile Massiot et al., Eric S. Boyd. CALDERA: A SCIENTIFIC DRILLING CONCEPT TO UNRAVEL CONNECTIONS AMONG LIFE, GEO-DYNAMICS AND ERUPTIONS IN A RIFTING ARC CALDERA, OKATAINA VOLCANIC CENTRE, AOTEAROA NEW ZEALAND.

Saaya Hario et al., Mikhail Drobizhev. HIGH-PERFORMANCE GENETICALLY ENCODED GREEN FLUORESCENT BIOSENSORS FOR INTRACELLULAR L-LACTATE.

Alexis S. Templeton, Eric T. Ellison, Peter B. Kelemen, James Leong, Eric S. Boyd, Daniel R. Colman, Juerg M. Matter. LOW-TEMPERATURE HYDROGEN PRODUCTION AND CONSUMPTION IN PARTIALLY-HYDRATED PERIDOTITES IN OMAN: IMPLICATIONS FOR STIMULATED GEOLOGICAL HYDROGEN PRODUCTION.

Eric S. Boyd, Daniel R. Colman, Alexis S. Templeton. PERSPECTIVE: MICROBIAL HYDROGEN METABOLISM IN ROCK-HOSTED ECOSYSTEMS.

Cody S. Clements, Zoe A. Pratte, Frank J. Stewart, Mark E. Hay. REMOVAL OF DETRITIVORE SEA CUCUMBERS FROM REEFS INCREASES CORAL DISEASE.

2019

Melody R. Lindsay, Rachel E. Johnston, Bonnie K. Baxter, Eric S. Boyd.Effects of salinity on microbialite-associated production in Great Salt Lake, Utah. Ecological Society of America. Volume 100, Issue 3, January 2019. doi.org/10.1002/ecy.2611.

2018

Angela M. Oliverio, Jean F. Power, Alex Washburne, S. Craig Cary, Matthew B. Stott, Noah Fierer. The ecology and diversity of microbial euaryotes in geothermal springs. The ISME Journal. Volume 12, April 2018, Pages 1918-1928. doi.org/10.1038/s41396-018-0104-2.

Laura M. Bergner, Richard J. Orton, Ana da Silva Filipe, Andrew E. Shaw, Daniel J. Becker, Carlos Tello, Roman Biek, Daniel G Streicker. Using noninvasive metagenomics to characterize viral communities from wildlife. Molecular Ecology Resources. Volume 19, Issue 1, September 2018. doi.org/10.1111.1755-0998.12946.

Alexander J. McMenamin, Katie F. Daughenbaugh, Fenali Parekh, Marie C. Pizzorno, Michelle L. Flenniken. Honey bee and bumble bee antiviral defense. Viruses. Volume 10, Issue 8, July 2018, Article 395. doi.org/10.3390/v10080395.

 Michelle L. Flenniken. Antiviral defense in invertebrates. Viruses. Volume 10, Issue 8, July 2018, Article 403. doi.org/10.3390/v1008040.

Maureen K. Kessler, Daniel J. Becker, Alison J. Peel, Nathan V. Justice, Tamika Lunn, Daniel E. Crowley, Devin N. Jones, Peggy Eby, Cecilia A Sánchez, Raina K. Plowright.Changing resource landscapes and spillover of henipaviruses. The New York Academy of Sciences. Volume 1429, Issue 1, August 2018, Pages 78-99. doi.org/10/1111/nyas.13910.

Royce A. Wilkinson, Coleman Martin, Artem A. Nemudryi, Blake Wiedenheft. CRISPR RNA-guided autonomous delivery of Cas9. Nature Structural & Molecular Biology. Volume 26, Issue 1, December 2018, Pages 14-24. doi.org/10.1038/s41594-018-0173-y.

Colin G. Miller, Edward E. Schmidt. Disulfide reductase systems in liver. British Journal of Pharmacology. Volume 176, Issue 4, September 2018, Pages 532-543. doi.org/10.1111/bph.14498.

Heidi J. Smith, Anna J. Zelaya, K. B. De Leon, R. Chakraborty, D. A. Elias, T. C. Hazen, A. P. Arkin, Al B. Cunningham, M. W. Fields. Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments. FEMS Microbiology Ecology. Volume 94, Issue 12, September 2018. doi.org/10.1093/femsec/fiy191.

Siamak K. Sorooshyari, Matthew P. Taylor, H. Vincent Poor.Probabilistic Modeling of Pseudorabies Virus Infection in a Neural Circuit. Journal of Computational Biology. Volumer 25, Issue 11, August 2018. doi.org/10.1089/cmb.2017.0131.

Michael Coryell, Mark McAlpine, Nicholas V. Pinkham, Timothy R. McDermott, Seth T. Walk. The gut microbiome is required for full protection against acute arsenic toxicity in mouse models. Nature Communications. Volume 9, Article 5434, November 2018. doi.org/10.1038/s41467-018-07803-9.

Albert Miller; Jaime Szeinuk, Curtis W. Noonan, Claudia I. Henschke, Jean Pfau, Brad Black, David F. Yankelevitz, Mingzhu Liang, Ying Liu, Rowena Yip, Tracy McNew, Laura Linker, Raja Flores. Libby Amphibole Disease: Pulmonary Function and CT Abnormalities in Vermiculite Miners. Journal of Occupational and Environmental Medicine. February 2018, 60(2):167–173, doi.org/10.1097/JOM.0000000000001178

Alexander J McMenamin, Michelle L Flenniken. Recently identified bee viruses and their impact on bee pollinators. Volume 26, April 2018, Pages 120-129. doi.org/10.1016/j.cois.2018.02.009

Algirdas J. Jesaitis, Jeannie Gripentrog, & Jovanka M. Voyich. Formyl Met-Leu-Phe-Stimulated FPR1 Phosphorylation in Plate-Adherent Human Neutrophils: Enhanced Proteolysis but Lack of Inhibition by Platelet-Activating Factor. Journal of Immunology Research. Volume 2018 (2018), Article ID 3178970, 11 pages. doi.org/10.1155/2018/3178970

Bruce L. Granger. Accessibility and Contribution to Glucan Masking of Natural and Genetically Tagged Versions of Yeast Wall Protein 1 of Candida albicans. PLoS ONE. January 2018, 13(1): e0191194. doi.org/10.1371/journal.pone.0191194.

Jean C Pfau. Immunotoxicity of asbestos. Current Opinion in Toxicology. Volume 10, August 2018, Pages 1-7. DOI: 10.1016/j.cotox.2017.11.005.

Carl J. Yeoman, Suzanne L. Ishaq, Elena Bichi, Sarah K. Olivo, James Lowe & Brian M. Aldridge. Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract. Scientific Reports. Volume 8, February 2018, Article number: 3197 . doi/10.1038/s41598-018-21440-8

Dejan Micic, Andres Yarur, Alex Gonsalves, Vijaya L. Rao, Susan Broadaway, Russell CohenSushila Dalal, John N. Gaetano, Laura R. Glick, Ayal Hirsch, Joel Pekow, Atsushi Sakuraba, Seth T. Walk, David T. Rubin. Risk Factors for Clostridium difficile Isolation in Inflammatory Bowel Disease: A Prospective Study. Digestive Diseases and Sciences. Volume 63, April 2018,  Issue 4, pp 1016–1024. doi.org/10.1007/s10620-018-4941-7

Gerardo Martin, Carlos Yanez-Arenas, Raina K. Plowright, Carla Chen, Billie Roberts, Lee F. Skerratt. Hendra Virus Spillover is a Bimodal System Driven by Climatic Factors. EcoHealth. Volume 2018, January 2018, pg 1-17. doi.org/10.1007/s10393-017-1309-y

Igor A. Schepetkina, Liliya N. Kirpotina, Pete T. Mitchella, Аnarkul S. Kishkentaevab, Zhanar R. Shaimerdenovab, Gayane A. Atazhanovab, Sergazy M. Adekenovb, Mark T.Quinn. The natural sesquiterpene lactones arglabin, grosheimin, agracin, parthenolide, and estafiatin inhibit T cell receptor (TCR) activation. Volume 146, February 2018, Pages 36-46. doi.org/10.1016/j.phytochem.2017.11.010.

Lauren C. Franco, Sadie Steinbeisser, Grant M. Zane, Judy D. Wall, Matthew W. Fields. Cr(VI) reduction and physiological toxicity are impacted by resource ratio in Desulfovibrio vulgaris. Applied Microbiology and Biotechnology. Volume 102, March 2018, Issue 6, pp 2839–2850. doi.org/10.1007/s00253-017-8724-4

Markus Dagnella, Edward E Schmidt, Elias S.J.Arnér. The A to Z of modulated cell patterning by mammalian thioredoxin reductases. Volume 115, 1 February 2018, Pages 484-496. doi.org/10.1016/j.freeradbiomed.2017.12.029

Rebecca Hochstein, Daniel Bollschweiler, Sanjay Dharmavaram, Nathanael G. Lintner, Jürgen M. Plitzko, Robijn Bruinsma, Harald Engelhardt, Mark J. Young, William S. Klug and C. Martin Lawrence. Structural studies of Acidianus tailed spindle virus reveal a structural paradigm used in the assembly of spindle-shaped viruses. PNAS February 27, 2018. 115 (9) 2120-2125. doi.org/10.1073/pnas.1719180115

Eli W. Sward, Elizabeth M. Fones, Russel R. Spaan, Kyler B. Pallister, Brandon L. Haller, Fermin E. Guerra, Oliwia W. Zurek, Tyler K. Nygaard, Jovanka M. Voyich. Staphylococcus aureus SaeR/S-Regulated Factors Decrease Monocyte-Derived Tumor Necrosis Factor–α to Reduce Neutrophil Bactericidal Activity. The Journal of Infectious Diseases. Volume 217, Issue 6, March 2018, Pages 943-952. DOI: 10.1093/infdis/jix652

D. Ausbacher, L. Lorenz, B. Pitts, P.S. Stewart, D.M. Goeres. Paired methods to measure biofilm killing and removal: a case study with Penicillin G treatment of Staphylococcus aureus biofilm. Applied Microbiology. Volume 66, Issue 3, March 2018, Pages 231-237. DOI: 10.1111/lam.12843.

T. Andrew Sebrell, Barkan Sidar, Rachel Bruns, Royce A. Wilkinson, Blake Wiedenheft, Paul J. Taylor, Brian A. Perrino, Linda C. Samuelson, James N. Wilking, Diane Bimczok. Live imaging analysis of human gastric epithelial spheroids reveals spontaneous rupture, rotation and fusion events. Cell and Tissue Research, Volume 371, Issue 2, February 2018, Pages 293-307. DOI: 10.1007/s00441-017-2726-5.

Erin E. Burns, Barbara K. Keith, Mohammed Y. Refai, Brian Bothner, William E. Dyer. Constitutive redox and phosphoproteome changes in multiple herbicide resistant Avena fatua L. are similar to those of systemic acquired resistance and systemic acquired acclimation. Journal of Plant Physiology. Volume 220, January 2018, Pages 105-114. DOI: 10.1016/j.jplph.2017.11.004

Margaret J. Eggers, John T. Doyle, Myra J. Lefthand, Sara L. Young, Anita L. Moore-Nall, Larry Kindness, Roberta Other Medicine, Timothy E. Ford, Eric Dietrich, Albert E. Parker, Joseph H. Hoover, Anne K. Camper. Community Engaged Cumulative Risk Assessment of Exposure to Inorganic Well Water Contaminants, Crow Reservation, Montana. International Journal of Environmental Research and Public Health. Volume 15, Issue 1, January 2018, Article 76. DOI: 10.3390/ijerph15010076

E. Frances Cassirer, Kezia R. Manlove, Emily S. Almberg, Pauline L. Kamath, Mike Cox, Peregrine Wolff,  Annette Roug, Justin Shannon, Rusty Robinson, Richard B. Harris, Ben J. Gonzales, Raina K. Plowright, Peter J. Hudson, Paul C. Cross, Andrew Dobson, Thomas E. Besser. Pneumonia in bighorn sheep: Risk and resilience. Wildlife Management Special Section: Mountain Sheep Management. Volume 82, Issue 1, January 2018, Pages 32-45. DOI: 10.1002/jwmg.21309.

Garth A James, Laurent Chesnel, Laura Boegli, Elinor deLancey Pulcini, Steve Fisher, Philip S Stewart. Analysis of Clostridium difficile biofilms: imaging and antimicrobial treatment. Journal of Antimicrobial Chemotherapy. Volume 73, Issue 1, January 2018, Pages 102–108. DOI: 10.1093/jac/dkx353.

2017

Jamie C. DeWitt, Deborah E. Keil.Current Issues in Developmental Immunotoxicity. Immunopathology in Toxicology and Drug Development. Volume 1, March 2017, pp 601-618. doi.org/10.1007/978-3-319-47377-2_13

Letizia Crocetti, Gianluca Bartolucci, Agostino Cilibrizzi, Maria Paola GiovannoniEmail author, Gabriella Guerrini, Antonella Iacovone, Marta Menicatti, Igor A. Schepetkin, Andrei I. Khlebnikov, Mark T. Quinn and Claudia Vergelli. Synthesis and analytical characterization of new thiazol-2-(3H)-ones as human neutrophil elastase (HNE) inhibitors. Chemistry Central Journal. Volume 11, December 2017, page 127. doi.org/10.1186/s13065-017-0358-1

S. L. Ishaq, C. J. Yeoman, T. R. Whitney. Ground Juniperus pinchotii and urea in supplements fed to Rambouillet ewe lambs Part 2: Ewe lamb rumen microbial communities. Journal of Animal Science. Volume 95, Issue 10, October 2017, Pages 4587–4599. doi.org/10.2527/jas2017.1731

T. M. Nelson, J. C. Borgogna, R. D. Michalek, D. W. Roberts, J. M. Rath, E. D. Glover, J. Ravel, M. D. Shardell, C. J. Yeoman & R. M. Brotman. Cigarette smoking is associated with an altered vaginal tract metabolomic profile. Scientific Reports. 8, October 2017, Article number: 852. doi:10.1038/s41598-017-14943-3

Thomas Fouqueau, Fabian Blombach, Ross Hartman, Alan C. M. Cheung, Mark J. Young & Finn Werner. The transcript cleavage factor paralogue TFS4 is a potent RNA polymerase inhibitor. Nature Communications. 1914, December 2017. doi:10.1038/s41467-017-02081-3

Roy Price, Eric S. Boyd, Tori M. Hoehler, Laura M. Wehrmann, Erlendur Bogason, Hreiðar Þór Valtýsson, Jóhann Örlygsson, Bjarni Gautason, Jan P. Amend. Alkaline vents and steep Na⁺ gradients from ridge-flank basalts—Implications for the origin and evolution of life. GeoScienceWorld. Geology October 2017, 45 (12): 1135-1138. doi.org/10.1130/G394741.

Peter M. J. Douglas, Daniel A. Stolper, John M. Eiler, Alex Sessions, Michael Lawson, Yanhua Shuai Andrew Bishop, Olaf G. Podlaha, Alexandre A. Ferreirah, Eugenio V. Santos Neto, Martin Niemann, Arne S. Steen, Ling Huang, Laura Chimiak, David L. Valentine, Jens Fiebig, Andrew J. Luhmann, William E. Seyfried Jr., Giuseppe Etiope, Martin Schoell, William P. Inskeep, James J. Moran, Nami Kitchen. Methane clumped isotopes: Progress and potential for a new isotopic tracer. Organic Geochemistry. Volume 113, November 2017, Pages 262-282. DOI: 10.1016/j.orggeochem.2017.07.016.

Kelly M. Shepardson, Benjamin Schwarzb, Kyle Larson, Rachelle V. Morton, John Averab, Kimberly McCoyb, Alayna Caffreya, Ann Harmsen, Trevor Douglas, Agnieszka Rynda-Apple. Induction of Antiviral Immune Response through Recognition of the Repeating Subunit Pattern of Viral Capsids Is Toll-Like Receptor 2 Dependent. American Society for Microbiology. Volume 8, Issue 6, November 2017. DOI: 10.1128/mBio.01356-17 .

David R. Hill, Sha Huang, Melinda S. Nagy, Veda K. Yadagiri, Courtney Fields, Dishari Mukherjee, Brooke Bons, Priya H. Dedhia, Alana M. Chin, Yu-Hwai Tsai, Shrikar Thodla, Thomas M. Schmidt, Seth Walk, Vincent B. Young, Jason R. Spence. Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium. eLife. November 2017. DOI: 10.7554/eLife.29132

O. A. Nurkenov, Zh. B. Satpaeva, I. A. Schepetkin, A. I. Khlebnikov, K. M. Turdybekov, T. M. Seilkhanov, S. D. Fazylov. Synthesis and biological activity of hydrazones of o- and p-hydroxybenzoic acids. Spatial structure of 5-Bromo-2-hydroxybenzylidene-4-hydroxybenzohydrazide. Russian Journal of General Chemistry. Volume 87, Issue 10, October 2017, Pages 2299-2306. DOI: 10.1134/S1070363217100097

Christian C. Voigt, Winifred F. Frick, Marc W. Holderied, Richard Holland, Gerald Kerth, Marco A. R. Mello, Raina K. Plowright, Sharon Swartz, Yossi Yovel. Principles and Patterns of Bat Movements: From Aerodynamics to Ecology. The Quarterly Review of Biology. Volume 92, Number 3, September 2017, Pages 267-287. DOI: 10.1086/693847

Raina K. Plowright, Colin R. Parrish, Hamish McCallum, Peter J. Hudson, Albert I. Ko, Andrea L. Graham, James O. Lloyd-Smith. Pathways to zoonotic spillover. Nature Reviews Microbiology. Volume 15, May 2017, pages 502–510. DOI: 10.1038/nrmicro.2017.45

Luke Berry, S. Poudel, M. Tokmina-Lukaszewska, D.R. Colman, D.M.N. Nguyen, G.J. Schut, M.W.W. Adams, J.W. Peters, Eric S. Boyd, Brian Bothner. H/D exchange mass spectrometry and statistical coupling analysis reveal a role for allostery in a ferredoxin-dependent bifurcating transhydrogenase catalytic cycle. BBA - Biochimica et Biophysica Acta. January 2018. DOI: 10.1016/j.bbagen.2017.10.002

Gaurav Kaushik, Yu Xia, Jean C. Pfau, Michael A. Thomas. Dysregulation of autism-associated synaptic proteins by psychoactive pharmaceuticals at environmental concentrations. Neuroscience letters. November 2017. DOI: 10.1016/j.neulet.2017.09.058.

Rodrigo Romero, Volkan I. Sayin, Shawn M. Davidson, Matthew R. Bauer, Simranjit X. Singh, Sarah E. LeBoeuf, Triantafyllia .R Karakousi, Donald C. Ellis, Arjun Bhutkar, Francisco J. Sanchez-Rivera, Lakshmipriya Subbaraj, Britney Martinez, Roderick T. Bronson, Justin R. Prigge, Edward E. Schmidt, Craig J. Thomas, Chandra Goparaju, Angela Davies, Igor Dolgalev, Adriana Heguy, Viola Allaj, John T. Poirier, Andre L. Moreira, Charles M. Rudin, Harvey I. Pass, Matthew G. Vander Heiden, Tyler Jacks, Thales Papagiannakopoulos. Keap1 loss promotes Kras-driven lung cancer and results in dependence on glutaminolysis. Nature Medicine. October 2017. DOI: 10.1038/nm.4407

K. B. De Leon, G. M. Zane, V. V. Trotter, G. P. Krantz, A. P. Arkin, G. P. Butland, P. J. Walian, M. W. Fields, J. D. Wall. Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough. mBio. October 2017. DOI: 10.1128/mBio.01696-17. 

Sandra K. Halonen. Use of Human Neurons Derived via Cellular Reprogramming Methods to Study Host-Parasite Interactions of Toxoplasma gondii in Neurons. Cells. September 2017. DOI: 10.3390/cells6040032

Joanna-Lynn C. Borgogna, Carl J. Yeoman. The Application of Molecular Methods Towards an Understanding of the Role of the Vaginal Microbiome in Health and Disease. Methods in Microbiology. August 2017. DOI: 10.1016/bs.mim.2017.08.003. 

Daniel R. Colman, Saroj Poudel, Trinity L. Hamilton, Jeff R. Havig, Matthew J. Selensky, Everett L. Shock, Eric S. Boyd. Geobiological feedbacks and the evolution of thermoacidophiles. The ISME Journal. August 2017. DOI: 10.1038/ismej.2017.162.

Catherine G. Haase, Robert J. Jr Fletcher, Daniel H. Slone, James P. Reid, Susan M. Butler. Landscape complementation revealed through bipartite networks: an example with the Florida manatee. Landscape Ecology. August 2017. DOI: 10.1007/s10980-017-0560-5. 

Jesse B. Therien, Jacob H. Artz, Saroj Poudel, Trinity Hamilton, Zhenfeng Liu, Seth M. Noone, Michael W. W. Adams, Paul W. King, Donald A. Bryant, John W. Peters. The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5. Frontiers in Microbiology. July 2017. DOI: 10.3389/fmicb.2017.01305

Pilar Manrique, Michael Dills, Mark J. Young. The Human Gut Phage Community and Its Implications for Health and Disease. Viruses-Basel. June 2017. DOI: 10.3390/v9060141

D. J. Kao, B. J. Saeedi, D. Kitzenberg, K. M. Burney, E. Dobrinskikh, K. D. Battista, A. Vazquez-Torres, S. P. Colgan, Douglas J. Kominsky. Intestinal Epithelial Ecto-5'-Nucleotidase (CD73) Regulates Intestinal Colonization and Infection by Nontyphoidal Salmonella. Infection and Immunity. July 2017. DOI: 10.1128/IAI.01022-16.

John W. Taylor, Sara Branco, Cheng Gao, Chris Hann-Soden, Liliam Montoya, Iman Sylain, Pierre Gladieux. Sources of Fungal Genetic Variation and Associating It with Phenotypic Diversity. Microbiology Spectrum. September 2017. DOI: 10.1128/microbiolspec.FUNK-0057-2016

Wenchao Feng, Dylan Minor, Mengyao Liu, Benfang Lei. Requirement and Synergistic Contribution of PAF acetylhydrolase Sse and Streptolysin S to Inhibition of Neutrophil Recruitment and Systemic Infection by Hypervirulent emm3 Group A Streptococcus in Subcutaneous Infection of Mice. Infection and Immunity. September 2017. DOI: 10.1128/IAI.00530-17

Hong Fan, Chorlada Paiboonrungruan, Xinyan Zhang, Justin R Prigge, Edward E Schmidt, Zheng Sun, Xiaoxin Chen. Nrf2 regulates cellular behaviors and Notch signaling in oral squamous cell carcinoma cells. Biochemical and Biophysical Research Communications. November 2017. DOI: 10.1016/j.bbrc.2017.08.049

Madia Letizia Stama, Joanna Slusarczyk, Enza Lacivita, Liliya N. Kirpotina, Igor A. Schepetkin, Katarzyna Chamera, Chiara Riganti, Roberto Perrone, Mark T. Quinn, Agnieszka Basta-Kaim, Marcello Leopoldo. Novel ureidopropanamide based N-formyl peptide receptor 2 (FPR2) agonists with potential application for central nervous system disorders characterized by neuroinflammation. European Journal of Medicinal Chemistry. December 2017. DOI: 10.1016/j.ejmech.2017.09.023

Leon Zheng, Caleb J. Kelly, Kayla D. Battista, Rachel Schaefer, Jordi M. Lanis, Erica E. Alexeev, Ruth X. Wang, Joseph C. Onyiah, Douglas J. Kominsky, Sean P. Colgan. Microbial-Derived Butyrate Promotes Epithelial Barrier Function through IL-10 Receptor-Dependent Repression of Claudin-2. Journal of Immunology. October 2017. DOI: 10.4049/jimmunol.1700105

Alayna K. Caffrey-Carr, Caitlin H. Kowalski, Sarah R. Beattie, Nathan A. Blaseg, Chanell R. Upshaw, Arsa Thammahong, Hannah E. Lust, Yi-Wei Tang, Tobias M. Hohl, Robert A. Cramer, Joshua J. Obar. IL-1a is Critical for Resistance Against Highly Virulent Aspergillus fumigatus Isolates. Infection and Immunity. September 2017. DOI: 10.1128/IAI.00661-17

Madia Letizia Stama, Enza Lacivita, Liliya N. Kirpotina, Mauro Niso, Roberto Perrone, Igor A. Schepetkin, Mark T. Quinn, Marcello Leopoldo. Functional N-Formyl Peptide Receptor 2 (FPR2) Antagonists Based on Ureidopropanamide Scaffold Have Potential to Protect Against Inflammation-associated Oxidative Stress. ChemMedChem. November 2017. DOI: 10.1002/cmdc.201700429

Sarah R. Beattie, Kenneth M. K. Mark, Arsa Thammahong, Laure Nicolas Annick Ries, Saurabh Dhingra, Alayna K. Caffrey-Carr, Chao Cheng, Candice C. Black, Paul Bowyer, Michael J. Bromley, Joshua J. Obar, Gustavo H. Goldman, Robert A. Cramer. Filamentous fungal carbon catabolite repression supports metabolic plasticity and stress responses essential for disease progression. PLOS Pathogegns. April 2017. DOI: 10.1371/journal.ppat.1006340

Gaurav Kaushik, Yu Xia, Jean C. Pfau, Michael A. Thomas. Dysregulation of autism-associated synaptic proteins by psychoactive pharmaceuticals at environmental concentrations. Neuroscience Letters. November 2017. DOI: 10.1016/j.neulet.2017.09.058

Amaya M. Garcia Costas, Saroj Poudel, Anne-Frances Miller, Gerrit J. Schut, Rhesa N. Ledbetter, Kathryn R. Fixen, Lance C. Seefeldt, Michael W. W. Adams, Caroline S. Harwood, Eric S. Boyd, John W. Peters. Defining Electron Bifurcation in the Electron Transferring Flavoprotein Family. Journal of Bacteriology. November 2017. DOI: 10.1128/JB.00440-17

David J. Paez, J. Giles, H. McCallum, H. Field, D. Jordan, A. J. Peel, Raina K. Plowright. Conditions affecting the timing and magnitude of Hendra virus shedding across pteropodid bat populations in Australia. Epidemiology and Infection. September 2017. DOI: 10.1017/S0950268817002138

Raina K. Plowright, Kezia R. Manlove, Thomas E. Besser, David J. Paez, Kimberly R. Andrews, Patrick E. Matthews, Lisette P. Waits, Peter J. Hudson, Frances E. Cassirer.  Age-specific infectious period shapes dynamics of pneumonia in bighorn sheep. Ecology Letters. September 2017. DOI: 10.1111/ele.12829

Jean C. Pfau, Brenda Buck, Rodney V. Metcalf, Zoie Kaupish, Caleb Stair, Maria Rodriguez, Deborah E. Keil. Comparative health effects in mice of Libby amphibole asbestos and a fibrous amphibole from Arizona. Toxicology and Applied Pharmacology. November 2017. DOI: 10.1016/j.taap.2017.08.022.

Cassia Wagner, Vijay Reddy, Francisco Asturias, Maryam Khoshouei, John E Johnson, Pilar Manrique, Jacob Munson-McGee, Wolfgang Baumeister, C Martin Lawrence, Mark J Young. Isolation and Characterization of Metallosphaera turreted icosahedral virus (MTIV), a founding member of a new family of archaeal viruses. Journal of Virology. October 2017. DOI: 10.1128/JVI.00925-17. 

Liliya N. Kirpotina, Igor A. Schepetkin, Andrei I. Khlebnikov, Olga I. Ruban, Yunjun Ge, Richard D. Ye, Douglas J. Kominsky, Mark T. Quinn. 4-Aroyl-3-hydroxy-5-phenyl-1H-pyrrol-2(5H)-ones as N-Formyl Peptide Receptor 1 (FPR1) Antagonists.  Biochemical Pharmacology. October 2017. DOI: 10.1016/j.bcp.2017.07.004. 

Rachel A. Rawle, Timothy Hamerly, Brian P. Tripet, Richard J. Giannone, Louie Wurch, Robert L. Hettich, Mircea Podar, Valerie Copie, Brian Bothner. Multi-omics analysis provides insight to the Ignicoccus hospitalis-Nanoarchaeum equitans association. Biochimica et Biophysica Acta (BBA) - General Subjects. September 2017. DOI: 10.1016/j.bbagen.2017.06.001. 

J Sharma, M Uchida, H.M. Miettinen, T Douglas. Modular interior loading and exterior decoration of a virus-like particle. Nanoscale. 2017. DOI: 10.1039/C7NR03018E. 

K. Perea, K. Perz, S. K. Olivo, A. Williams, Medora Lachman, S. L. Ishaq, Jennifer Thomson, Carl J. Yeoman. Feed efficiency phenotypes in lambs involve changes in ruminal, colonic, and small-intestine-located microbiota. Journal of Animal Science. 2017. DOI: 10.2527/jas2016.1222

Omolola C. Betiku, Carl J. Yeoman, T. Gibson Gaylord, Glenn C. Duff, Timothy Hamerly, Brian Bothner, Stephanie S. Block, Wendy M. Sealey. Differences in amino acid catabolism by gut microbes with/without prebiotics inclusion in GDDY-based diet affect feed utilization in rainbow trout. Aquaculture. September 2017. DOI: 10.1016/j.aquaculture.2017.09.006.

K. B. Uldahl, Seth T. Walk, S. C. Olshefsky, M. J. Young, X. Peng. SMV1, an extremely stable thermophilic virus platform for nanoparticle trafficking in the mammalian GI tract. Journal of Applied Microbiology. September 2017. DOI: 10.1111/jam.13584. 

Rachel A. Rawle, Timothy Hamerly, Brian P. Tripet, Richard J. Giannone, Louie Wurch, Robert L. Hettich, Mircea Podar, Valerie Copie, Brian Bothner. Multi-level Omics Analysis Provides Insight to the Ignicoccus hospitalis-Nanoarchaeum equitans Association. Biochimica et Biophysica Acta. September 2017. DOI: 10.1016/j.bbagen.2017.06.001

Luke J McKay, Roland Hatzenpichler, William P Inskeep, Matthew W Fields. Occurrence and expression of novel methyl-coenzyme M reductase gene (mcrA) variants in hot spring sediments. Scientific reports. August 2017. DOI: 10.1038/s41598-017-07354-x.

Carlo R. Carere, Kiel Hards, Karen M. Houghton, Jean F. Power, Ben McDonald, Christophe Collet, Daniel J. Gapes, Richard Sparling, Eric S. Boyd, Gregory M. Cook, Chris Greening, Matthew B. Stott. Mixotrophy drives niche expansion of verrucomicrobial methanotrophs. The ISME Journal. August 2017. 

Diep M. N. Nguyen, Gerrit J. Schut, Oleg A. Zadvornyy, Monika Tokmina-Lukaszewska, Saroj Poudel, Gina L. Lipscomb, Leslie A. Adams, Jessica T. Dinsmore, William J. Nixon, Eric S. Boyd, Brian Bothner, John W. Peters, Michael W. W. Adams. Two functionally distinct NADP(+)-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus. Journal of Biological Chemistry. July 2017. DOI: 10.1074/jbc.M117.794172

Maximiliano J. Amenabar, Everett L. Shock, Eric E. Roden, John W. Peters, & Eric S. Boyd. Microbial substrate preference dictated by energy demand rather than supply. Nature Geoscience. July, 2017. DOI: 10.1038/ngeo2978

Ivonne Gonzalez-Gamboa, Pilar Manrique, Flora Sanchez, Fernando Ponz. Plant-made potyvirus-like particles used for log-increasing antibody sensing capacity. Journal of Biotechnology. July 2017. DOI: 10.1016/j.jbiotec.2017.06.014.

Laura M. Brutscher, Katie F. Daughenbaugh, Michelle L. Flenniken. Virus and dsRNA-triggered transcriptional responses reveal key components of honey bee antiviral defense. Scientific Reports. July 2017. DOI: 10.1038/s41598-017-06623-z. 

Nienke W. M. de Jong, Kasra X Ramyar, Fermin E Guerra, Reindert Nijland, Cindy Fevre, Jovanka M. Voyich, Alex J. McCarthy, Brandon L. Garcia, Kok P. M. van Kessel, Jos A. G. van Strijp, Brian V. Geisbrecht, Pieter-Jan A. Haas. Immune evasion by a staphylococcal inhibitor of myeloperoxidase. Proceedings of the National Academy of Sciences of the United States of America. July 2017. DOI: 10.1073/pnas.1707032114. 

Alexander McMenamin, Fiona Mumoki, Maryann Frazier, Joseph Kilonzo, Bernard Mweu, Tracey Baumgarten, Harland Patch, Baldwyn Torto, Daniel Masiga, James Tumlinson, Christina Grozinger, Elliud Muli. The impact of hive type on the behavior and health of honey bee colonies (Apis mellifera) in Kenya. Apidologie. June 2017. DOI: 10.1007/s13592-017-0515-5. 

Katherine J. Davis, Shipeng Lu, Elliott P. Barnhart, Albert E. Parker, Matthew W. Fields, Robin Gerlach. Type and amount of organic amendments affect enhanced biogenic methane production from coal and microbial community structure. Fuel. June 2018. DOI: 10.1016/j.fuel.2017.09.074. 

Justin R. Prigge, Lucia Coppo, Sebastin S. Martin, Fernando Ogata, Colin G. Miller, Michael D. Bruschwein, David J. Orlicky, Colin T. Shearn, Jean A. Kundert, Julia Lytchier, Alix E. Herr, Ase Mattsson, Matthew P. Taylor, Tomas Gustafsson, Elias S. J. Arner, Arne Holmgren, Edward E. Schmidt. Hepatocyte Hyperproliferation upon Liver-Specific Co-disruption of Thioredoxin-1, Thioredoxin Reductase-1, and Glutathione Reductase. Cell Reports. June 2017. DOI: 10.1016/j.celrep.2017.06.019

Pilar Manrique, Michael Dills, Mark J. Young. The Human Gut Phage Community and Its Implications for Health and Disease. Viruses. June 2017. DOI: 10.3390/v9060141. 

Ryan N. Jackson, Paul Bg van Erp, Samuel H. Sternberg, Blake Wiedenheft. Conformational regulation of CRISPR-associated nucleases. Current Opinion in Microbiology. June 2017. DOI: 10.1016/j.mib.2017.05.010.

Claudia Vergelli, Igor A. Schepetkin, Letizia Crocetti, Antonella Iacovone, Maria Paola Giovannoni, Gabriella Guerrini, Andrei I. Khlebnikov, Samuele Ciattini, Giovanna Ciciani, Mark T. Quinn. Isoxazol-5(2H)-one: a new scaffold for potent human neutrophil elastase (HNE) inhibitors. Journal of Enzyme Inhibition and Medicinal Chemistry. June 2017. DOI: 10.1080/14756366.2017.1326915

J. Jeong, C. S. Smith, A. J. Peel, Raina K. Plowright, D. H. Kerlin, J. McBroom, H. McCallum. Persistent infections support maintenance of a coronavirus in a population of Australian bats (Myotis macropus). Epidemiol Infect. May 2017. DOI: 10.1017/S0950268817000991. 

Daniel R. Colman, Saroj Poudel, Blake W. Stamps, Eric S. Boyd, John R. Spear. The deep, hot biosphere: Twenty-five years of retrospection.Proceedings of the National Academy of Sciences. May 2017. DOI: 10.1073/pnas.1701266114

Sara Branco, Hélène Badouina, Ricardo C. Rodríguez de la Vegaa, Jérôme Gouzyb, Fantin Carpentiera,Gabriela Aguiletaa, Sophie Siguenzab, Jean-Tristan Brandenburga, Marco A. Coelhoc, Michael E. Hoodd, and Tatiana Girauda.  Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism. PNAS. May, 2017. DOI: 10.1073/pnas.1701658114

Kezia R. Manlove, E. Frances Cassirer, Raina K. Plowright, Paul C. Cross, Peter J. Hudson. Contact and contagion: Probability of transmission given contact varies with demographic state in bighorn sheep. Journal of Animal Ecology. May, 2017. DOI: 10.1111/1365-2656.12664.

E. Percak-Dennett, S. He, B. Converse, H. Konishi, H. Xu, A. Corcoran, D. Noguera, C. Chan, A. Bhattacharyya, T. Borch, Eric Boyd, E. E. Roden. Microbial acceleration of aerobic pyrite oxidation at circumneutral pH. Geobiology. April, 2017. DOI: 10.1111/gbi.12241

Christina L. Faust, Andrew P. Dobson, Nicole Gottdenker, Laura S. P. Bloomfield, Hamish I. McCallum, Thomas R. Gillespie, Maria Diuk-Wasser, Raina K. Plowright. Null expectations for disease dynamics in shrinking habitat: dilution or amplification?. Philosophical Transactions of the Royal Society B-Biological Sciences. April, 2017. DOI: 10.1098/rstb.2016.0173. 

D. T. Snyder, J. F. Hedges, Mark A. Jutila. Getting “Inside” Type I IFNs: Type I IFNs in Intracellular Bacterial Infections. Journal of Immunology Research. March 2017. DOI: 10.1155/2017/9361802.

R. S. Hindshaw, M. R. Lindsay, Eric S. Boyd. Diversity and abundance of microbial eukaryotes in stream sediments from Svalbard. Polar Biology. March 2017. DOI: 10.1007/s00300-017-2106-3. 

Saikat Chowdhury, Joshua Carter, MaryClare F. Rollins, Sarah M. Golden, Ryan N. Jackson, Connor Hoffman, Lyn'Al Nosaka, Joseph Bondy-Denomy, Karen L. Maxwell, Alan R. Davidson, Elizabeth R. Fischer, Gabriel C. Lander, Blake Wiedenheft. Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. Cell. March 2017. DOI: 10.1016/j.cell.2017.03.012. 

Anthony R. Flores, Randall J. Olsen, Concepcion Cantu, Kyler B. Pallister, Fermin E. Guerra, Jovanka M. Voyich, James M. Musser. Increased pilus production conferred by a naturally occurring mutation alters host-pathogen interaction in favor of carriage in Streptococcus pyogenes. Infection and Immunity. March 2017. DOI: 10.1128/IAI.00949-16. 

Eric S. Boyd, Ri-Qing Yu, Tamar Barkay, Trinity L. Hamilton, Bonnie K. Baxter, David L. Naftz, Mark Marvin-DiPasquale. Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah. March 2017. DOI: 10.1016/j.scitotenv.2016.12.157. 

Ping Zhang, Zhili He, Joy D. Van Nostrand, Yujia Qin, Ye Deng, Liyou Wu, Qichao Tu, Jianjun Wang, Christopher W. Schadt, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, David A. Stahl, Jizhong Zhou. Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer. Environmental Science & Technology. March, 2017. DOI: 10.1021/acs.est.6b02980.

Ninuo Xia, Fang Fang, Pengbo Zhang, Jun Cui, Chhavy Tep-Cullison, Tim Hamerley, Hyun Joo Lee, Theo Palmer, Brian Bothner, Jin Hyung Lee, and Renee Reijo Pera. A Knockin Reporter Allows Purification and Characterization of mDA Neurons from Heterogeneous Populations. Science Direct, Cell Report. March 2017. DOI: 10.1016/j.celrep.2017.02.023.

Gulmira Oezek, Igor A. Shepetkin, Gulzhakhan A. Utegenova, Liliya N. Kirpotina, Spencer R. Andrei, Temel Oezek, Kemal Husnu Can Baser, Karime T. Abidkulova, Svetlana V. Kushnarenko, Andrei I. Khlebnikov, Derek S. Damron, Mark T. Quinn. Chemical composition and phagocyte immunomodulatory activity of Ferula iliensis essential oils. Journal of Leukocyte Biology. March, 2017. DOI: 10.1189/jlb.3A1216-518RR. 

John Gilmer, Tanner Harding, Linda Woods, Brad Black, Raja Flores, Jean Pfau. Mesothelial cell autoantibodies upregulate transcription factors associated with fibrosis. Inhalation Toxicology. February, 2017. DOI: 10.1080/08958378.2016.1271841. 

Elliott P. Barnharta, Katherine J. Davis, Matthew Varonka, William Orem, Alfred B. Cunningham, Bradley D. Ramsay, Matthew W. Fields. Enhanced coal-dependent methanogenesis coupled with algal biofuels: Potential water recycle and carbon capture. Science Direct, Elsevier, International Journal of Coal Geology. February 2017. DOI: 10.1016/j.coal.2017.01.001

Rosana S. Molina, Robert E. Campbell, Nathan C. Shaner, Thomas E. Hughes, Mikhail Drobizhev. New GFP Variants with Enhanced Two-Photon Brightness. Science Direct, Biophysical Journal. February 2017. DOI: 10.1016/j.bpj.2016.11.1540

Saikat Chowdhury, MaryClare F. Rollins, Joshua Carter, Ryan Jackson, Lyn‘Al Nosaka, Blake Wiedenheft, Gabriel C. Lander. Using Cryoem to Understand How Phages Evade Bacterial CRISPR Defense System. Science Direct, Biophysical Journal. February 2017. DOI: 10.1016/j.bpj.2016.11.1811.

Tatsuya Akiyama, Kerry S. Williamson, Robert Shaefer, Shawna Pratt, Connie B. Chang, Michael J. Franklin. Resuscitation of Pseudomonas aeruginosa from dormancy requires hibernation promoting factor (PA4463) for ribosome preservation. Proceedings of the National Academy of Sciences. February 2017. DOI: 10.1073/pnas.1700695114. 

David J. Paez, Julian J. Dodson. Environment-specific heritabilities and maternal effects for body size, morphology and survival in juvenile Atlantic salmon (Salmo salar): evidence from a field experiment. Environmental Biology of Fishes. January 2017. DOI: 10.1007/s10641-016-0572-z.

Andrew J. King, Sarah P. Preheim, Kathryn L. Bailey, Michael S. RobesonII , Taniya Roy Chowdhury, Bryan R. Crable, Richard A. HurtJr., Tonia Mehlhorn, Kenneth A. Lowe, Tommy J. Phelps, Anthony V. Palumbo, Craig C. Brandt, Steven D. Brown, Mircea Podar, Ping Zhang, W. Andrew Lancaster, Farris Poole, David B. Watson, Matthew W. Fields, John-Marc Chandonia, Eric J. Alm, Jizhong Zhou, Michael W. W. Adams, Terry C. Hazen, Adam P. Arkin, and Dwayne A. Elias. Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation. ACS Publications, Environmental Science and Technology. January 2017. DOI: 10.1021/acs.est.6b04751

Marta Chaverra, Lynn George, Marc Mergy, Hannah Waller, Katharine Kujawa, Connor Murnion, Ezekiel Sharples, Julian Thorne, Nathaniel Podgajny, Andrea Grindeland, Yumi Ueki, Steven Eiger, Cassie Cusick, A. Michael Babcock, George A. Carlson, Frances Lefcort. The familial dysautonomia disease gene IKBKAP is required in the developing and adult mouse central nervous system. January, 2017. DOI: 10.1242/dmm.028258.

Mandi M. Roe, Steve Swain, T. Andrew Sebrell, Marisa A. Sewell, Madison M. Collins, Brian A. Perrino, Phillip D. Smith , Lesley E. Smythies and Diane Bimczok. Differential regulation of CD103 (αE integrin) expression in human dendritic cells by retinoic acid and Toll-like receptor ligands. Journal of Leukocyte Biology. January, 2017. DOI: 10.1189/jlb.1MA0316-131R. 

Blake Wiedenheft and Joseph Bondy-Denomy. CRISPR control of virulence in Pseudomonas aeruginosa. International Journal of Oral Science. January, 2017. DOI: 10.1038/cr.2017.6.

Gerardo Martin, Rebecca J Webb, Carla Chen, Raina K Plowright, Lee F Skerratt. Microclimates Might Limit Indirect Spillover of the Bat Borne Zoonotic Hendra Virus. Microbial Ecology. January 2017. DOI: 10.1007/s00248-017-0934-x. 

2016

Monika D Scuron, Kathleen Boesze-Battaglia, Mensur Dlakic, Bruce J Shenker. The Cytolethal Distending Toxin Contributes to Microbial Virulence and Disease Pathogenesis by Acting as a Tri-Perditious Toxin. Frontiers in Cellular and Infection Microbiology. December 2016. doi: 10.3389/fcimb.2016.00168. 

Jamie C. DeWitt, Brenda J. Buck, Dirk Goossens, c, Yuanxin Teng, James Pollard, Brett T. McLaurin, Russell Gerads, Deborah E. Keil. Health effects following subacute exposure to geogenic dust collected from active drainage surfaces (Nellis Dunes Recreation Area, Las Vegas, NV). Science Direct. December 2016. DOI: http://dx.doi.org/10.1016/j.toxrep.2016.12.002.

Wenchao Feng, Dylan Minor, Mengyao Liu, Jinquan Lia, , Suzanne L. Ishaq, Carl Yeoman and Benfang Lei. Null Mutations of Group A Streptococcus Orphan Kinase RocA: Selection in Mouse Infection and Comparison with CovS Mutations in Alteration of in vitro and in vivo Protease SpeB Expression and Virulence. American Society for Microbiology, Infection and Immunity. December, 2016. DOI: 10.1128/IAI.00790-16. 

Gerardo A. Martin, Carlos Yanez-Arenas, Billie J. Roberts, Carla Chen, Raina K. Plowright, Rebecca J. Webb, Lee F. Skerratt. Climatic suitability influences species specific abundance patterns of Australian flying foxes and risk of Hendra virus spillover. Elsevier, One Health. December, 2016. DOI: http://dx.doi.org/10.1016/j.onehlt.2016.07.004.

C. Hwang,A. Copeland, S. Lucas,A. Lapidus,K. Barry,J. C. Detter,T. Glavina del Rio, N. Hammon,S. Israni,E. Dalin,H. Tice,S. Pitluck,O. Chertkov,T. Brettin, D. Bruce,C. Han, J. Schmutz,. Larimer,M. L. Land,L. Hauser,N. Kyrpides,N. Mikhailova, Q. Ye, J. Zhou, P. Richardson, M. W. Fields. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. American Society for Microbiology, Genome Announcements. November, 2016. doi: 10.1128/genomeA.01226-16.

Joshua Carter, Connor Hoffman, Blake Wiedenheft. The Interfaces of Genetic Conflict Are Hot Spots for Innovation. November, 2016. DOI: 10.1016/j.cell.2016.12.007.

Stefan F Ehrentraut, Valerie F Curtis, Ruth X Wang, Bejan J Saeedi, Heidi Ehrentraut, Joseph C Onyiah, Caleb J Kelly, Eric L Campbell, Louise E Glover, Douglas J Kominsky, Sean P Colgan. Perturbation of neddylation-dependent NF-κB responses in the intestinal epithelium drives apoptosis and inhibits resolution of mucosal inflammation. Biosynthesis and Biodegradation. November 2016. DOI: 10.1091/mbc.E16-05-0273.

Benjamin Schwarz, Kaitlyn M Morabito, Tracy J Ruckwardt, Dustin P Patterson, John Avera, Heini M Miettinen, Barney S Graham, Trevor Douglas. Viruslike Particles Encapsidating Respiratory Syncytial Virus M and M2 Proteins Induce Robust T-Cell Responses. ACS Biomaterials Science and Engineering. November 2016. DOI: 10.1021/acsbiomaterials.6b00532. 

Claudia Vergelli, Igor A. Schepetkin, Giovanna Ciciani, Agostino Cilibrizzi, Letizia Crocetti, Maria Paola Giovannoni, Gabriella Guerrini, Antonella Iacovone, Liliya N. Kirpotina, Richard D. Ye, Mark T. Quinn. Synthesis of Five- and Six-Membered N-Phenylacetamido Substituted Heterocycles as Formyl Peptide Receptor Agonists. BJCP-Adverse Drug Reactions. November 2016. DOI: 10.1002/ddr.21370

Jaime Szeinuk, Curtis W. Noonan, Claudia I. Henschke, Jean Pfau, Brad Black, Albert Miller, David F. Yankelevitz, Mingzhu Liang, Ying Liu, Rowena Yip, Laura Linker, Tracy McNew, Raja M. Flores. Pulmonary abnormalities as a result of exposure to Libby amphibole during childhood and adolescence—The Pre-Adult Latency Study (PALS). November 2016. DOI: 10.1002/ajim.22674

Monika Tokmina-Lukaszewska, Zunji Shi, Brian Tripet, Timothy R McDermott, Valerie Copie, Brian Bothner, Gejiao Wang. Metabolic response of Agrobacterium tumefaciens 5A to arsenite. Environmental Microbiology. November 2016. DOI: 10.1111/1462-2920.13615

L.H. Hodgskiss, b, J. Nagy, E.P. Barnhart, A.B. Cunningham, M.W. Fields. Cultivation of a native alga for biomass and biofuel accumulation in coal bed methane production water. Elsevier, Algal Research. November, 2016. DOI: 10.1016/j.algal.2016.07.014.

Klára Vlčková, Andres Gomez, Klára J. Petrželková, Christopher A. Whittier, Angelique F. Todd, Carl J. Yeoman, Karen E. Nelson, Brenda A. Wilson, Rebecca M. Stumpf, David Modrý, Bryan A. White, Steven R. Leigh. Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla). Microbial Ecology. November, 2016. DOI: 10.1007/s00248-016-0745-5. 

Gill G. Geesey, Tamar Barkay and Sue King. Microbes in mercury-enriched geothermal springs in western North America. Science of the Total Environment. Volumes 569-570, November 2016, Pages 321-331. DOI: 10.1016/j.scitotenv.2016.06.080.

Rachel J. VanKempen-Frylinga, Anne K. Camper. Escherichia coli O157:H7 attachment and persistence within root biofilm of common treatment wetlands plants. Elsevier,Ecological Engineering. October, 2016. DOI: 10.1016/j.ecoleng.2016.10.018

Xiqiu Han, Logan Schultz, Weiyan Zhang, Jihao Zhu, Fanxu Meng, Gill G. Geesey. Mineral formation during bacterial sulfate reduction in the presence of different electron donors and carbon sources. Chemical Geology. Volume 435, October 2016, Pages 49-59. DOI: 10.1016/j.chemgeo.2016.04.022.

Tyler K. Nygaard, Scott D. Kobayashi, Brett Freedman, Adeline R. Porter, Jovanka M. Voyich, Michael Otto, Olaf Schneewind, Frank R. DeLeo. Interaction of Staphylococci with Human Bcells. PLOs One. October 2016. DOI: 10.1371/journal.pone.0164410

Heidi R. Schoen, Brent M. Peyton and W. Berk Knighton. Rapid total volatile organic carbonquantification from microbial fermentationusing a platinum catalyst and proton transferreaction‑mass spectrometry. Springer Open. October 2016. DOI: 10.1186/s13568-016-0264-2.

Tyler K. Nygaard, Scott D. Kobayashi, Brett Freedman, Adeline R. Porter, Jovanka M. Voyich, Michael Otto, Olaf Schneewind, Frank R. DeLeo. Interaction of Staphylococci with Human B cells. PLOS-One. October 2016. DOI: 10.1371/journal.pone.0164410.

 Vadim N. Gladyshev, Elias S. Arnér, Marla J. Berry, Regina Brigelius-Flohé, Elspeth A. Bruford, Raymond F. Burk, Bradley A. Carlson, Sergi Castellano, Laurent Chavatte, Marcus Conrad, Paul R. Copeland, Alan M. Diamond, Donna M. Driscoll, Ana Ferreiro, Leopold Flohéq, Fiona R. Green, Roderic Guigót, Diane E. Handy, Dolph L. Hatfield, John Hesketh, Peter R. Hoffmann, Arne Holmgren, Robert J. Hondal, Michael T. Howard, Kaixun Huang, Hwa-Young Kim, Ick Young Kim, Josef Köhrle, Alain Krol, Gregory V. Kryukov, Byeong Jae Lee, Byung Cheon Lee, Xin Gen Lei, Qiong Liu, Alain Lescure, Alexei V. Lobanov, Joseph Loscalzo, Matilde Maiorinor, Marco Mariottia, K. Sandeep Prabhu, Margaret P. Rayman, Sharon Rozovskyoo, Gustavo Salinas, Edward E. Schmidt, Lutz Schomburg, Ulrich Schweizer, Miljan Simonović, Roger A. Sunde, Petra A. Tsuji, Susan Tweedie, Fulvio Ursinir, Philip D. Whanger and Yan Zhang. Selenoprotein Gene Nomenclature. Journal of Biological Chemistry. September, 2016. DOI: 10.1074/jbc.M116.756155

E. Frances Cassirer, Kezia R. Manlove, Raina K. Plowright, Thomas E. Besser. Evidence for strain-specific immunity to pneumonia in bighorn sheep. Wiley Online Library, Wildlife Management. September, 2016. DOI: 10.1002/jwmg.21172.  

Cody J Zabransky, David G Hewitt, Randy W Deyoung, Shawn S Gray, Calvin Richardson, Andrea R Litt, Charles A Deyoung. A Detection Probability Model for Aerial Surverys of Mile Deer. Journal of Wildlife Management. September 2016. DOI: 10.1002/jwmg.21143

Kezia Manlove, E. Frances Cassirer, Paul C. Cross, Raina K. Plowright, Peter J. Hudson.Disease introduction is associated with a phase transition in bighorn sheep demographics. Ecology- Ecological Society of America.September 2016. DOI: 10.1002/ecy.1520

John R. Giles, Raina K. Plowright, Peggy Eby, Alison J. Peel, Hamish McCallum. Models of Eucalypt phenology predict bat population flux. Ecology of Evolution. September 2016. DOI: 10.1002/ece3.2382

Xinghong Yang, Beata Clapp, Theresa Thornburg, Carol Hoffman, David W. Pascual. Vaccination with a ΔnorD ΔznuA Brucella abortus mutant confers potent protection against virulent challenge. Elservier- Vaccine. September 2016. DOI: 10.1016/j.vaccine.2016.09.004

Deborah E. Keil, Brenda Buck, Dirk Goossens, Yuanxin Teng, James Pollard, Brett McLaurin, Russell Gerads, Jamie DeWitt. Health effects from exposure to atmospheric mineral dust near Las Vegas, NV, USA. Elsevier, Toxicology Reports. September, 2016. DOI: 10.1016/j.toxrep.2016.09.009

Saroj Poudel,  Monika Tokmina-Lukaszewska, Daniel R. Colman, Mohammed Refai, Gerrit J. Schut, Paul W. King, Pin-Ching Maness,  Michael W.W. Adams, John W. Peters,  Brian Bothner, Eric S. Boyd. Unification of [FeFe]-hydrogenases into three structural and functional groups. Biochimica et Biophysica Acta (BBA) - General Subjects. Volume 1860, Issue 9, September 2016, Pages 1910-1921. DOI: 10.1016/j.bbagen.2016.05.034. 

Igor A. Schepetkin, Svetlana V. Kushnarenko, Gulmira Özek, Liliya N. Kirpotina, Pritam Sinharoy^Δ, Gulzhakhan A. Utegenova, Karime T. Abidkulova, Temel Özek, Kemal Hüsnü Can Başer, Anastasia R. Kovrizhina, Andrei I. Khlebnikov, Derek S. Damron, and Mark T. Quinn. Modulation of Human Neutrophil Responses by the Essential Oils from Ferula akitschkensis and Their Constituents. Journal of Agricultural and Food Chemistry. September 2, 2016. DOI: 10.1021/acs.jafc.6b03205.

Wenchao Feng, Mengyao Liu, Daniel G. Chen, Rossana Yiu, Ferric C. Fang, Benfang Lei.Contemporary Pharyngeal and Invasive emm1 and Invasive emm12 Group A Streptococcus Isolates Exhibit Similar In Vivo Selection for CovRS Mutants in Mice. PLOS ONE. September 2016. DOI: 10.1371/journal.pone.0162742

J. Rafael Montenegro-Burke, Thiery Phommavongsay, Aries E. Aisporna, Tao Huan, Duane Rinehart, Erica Forsberg, Farris L. Poole, Michael P. Thorgersen, Michael W. W. Adams, Gregory Krantz, Matthew W. Fields, Trent R. Northen, Paul D. Robbins, Laura J. Niedernhofer, Luke Lairson, H. Paul Benton, and Gary Siuzdak. Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses. Analytical Chemistry. August, 2016. DOI: 10.1021/acs.analchem.6b02676.

Ameya A. Mashruwala, Shiven Bhatt, Saroj Poudel, Eric S. Boyd, Jeffrey M. Boyd. The DUF59 Containing Protein SufT Is Involved in the Maturation of Iron-Sulfur (FeS) Proteins during Conditions of High FeS Cofactor Demand in Staphylococcus aureus. PLOS, Genetics. August, 2016.  DOI: 10.1371/journal.pgen.1006233. 

Breana Pabst, Betsey Pitts, Ellen Lauchnor and Philip S. Stewart. Gel-Entrapped Staphylococcus aureus Bacteria as Models of Biofilm Infection Exhibit Growth in Dense Aggregates, Oxygen Limitation, Antibiotic Tolerance, and Heterogeneous Gene Expression. American Society for Microbiology, Antimicrobial Agents and Chemotherapy. August, 2016. DOI: 10.1128/AAC.01336-16. 

Stephen R. Parker, Robert F. West, Eric S. Boyd, Jayme Feyhl-Buska, Christopher H. Gammons, Tyler B. Johnston, Simon R. Poulson. Biogeochemical and microbial seasonal dynamics between water column and sediment processes in a productive mountain lake: Georgetown Lake, MT, USA. Journal of Geophysical Research, Biogeosciences. August, 2016. DOI: 10.1002/2015JG003309.

Jayme Feyhl-Buska, Yufei Chen, Chengling Jia, Jin-Xiang Wang, Chuanlun L. Zhang and Eric S. Boyd. Influence of Growth Phase, pH, and Temperature on the Abundance and Composition of Tetraether Lipids in the Thermoacidophile Picrophilus torridus. Frontiers in Microbiology. August, 2016. DOI: 10.3389/fmicb.2016.01323.

Pilar Manrique, Benjamin Bolduc, Seth T. Walk, John van der Oost, Willem M. de Vos, and Mark J. Young. Healthy human gut phageome. PNAS. August 29, 2016. DOI: 10.1073/pnas.1601060113

Laura M. Brutscher, Alexander J. McMenamin, Michelle L. Flenniken. The Buzz about Honey Bee Viruses. PLOS Pathogens. August 2016. DOI: 10.1371/journal.ppat.1005757. 

Luis O. De Serrano, Anne K. Camper, and Abigail M. Richards. An overview of siderophores for iron acquisition in microorganisms living in the extreme. BioMetals. August 2016, Volume 29, Issue 4, pp 551–571. DOI: 10.1007/s10534-016-9949-x.

Kathleen Boesze-Battaglia, Desiree Alexander, Mensur Dlakic, and Bruce J. Shenker. A Journey of Cytolethal Distending Toxins through Cell Membranes. Frontiers in Cellular and Infection Microbiology. August 2016. DOI: 10.3389/fcimb.2016.00081.

Alexander J McMenamin, Laura M Brutscher, William Glenny, and Michelle L Flenniken. Abiotic and biotic factors affecting the replication and pathogenicity of bee viruses. Current Opinion in Insect Science. Volume 16, August 2016, Pages 14-21. DOI: 10.1016/j.cois.2016.04.009.

Raina K. Plowright , Alison J. Peel, Daniel G. Streicker, Amy T. Gilbert, Hamish McCallum, James Wood, Michelle L. Baker, Olivier Restif. Transmission or Within-Host Dynamics Driving Pulses of Zoonotic Viruses in Reservoir–Host Populations. PLOS Neglected Tropical Diseases. August 2016. DOI: 10.1371/journal.pntd.0004796.s001.

Alayna K. Caffrey and Joshua J. Obar. Alarmin(g) the innate immune system to invasive fungal infections. Current Opinion in Microbiology. Volume 32, August 2016, Pages 135-143. DOI: 10.1016/j.mib.2016.06.002.

Jamie DeWitt, Brenda Buck, Dirk Goossens, Qing Hu, Rebecca Chow, Winnie David, Sharon Young, Yuanxin Teng, Mallory Leetham-Spencer, Lacey Murphy, James Pollard, Brett McLaurin, Russell Gerads and Deborah Keil. Health effects following subacute exposure to geogenic dusts from arsenic-rich sediment at the Nellis Dunes Recreation Area, Las Vegas, NV. Toxicology and Applied Pharmacology. Volume 304, August 2016, Pages 79-89. DOI: 10.1016/j.taap.2016.05.017.

Kristopher A. Hunt, Ryan deM. Jennings,William P. Inskeep and Ross P. Carlson. Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial community. Environmental Microbiology. August 2016. DOI: 10.1111/1462-2920.13444

S. Courtney Frasch, Eóin N. McNamee, Douglas Kominsky, Paul Jedlicka, Claudia Jakubzick, Karin Zemski Berry, Matthias Mack, Glenn T. Furuta, James J. Lee, Peter M. Henson, Sean P. Colgan and Donna L. Bratton. G2A Signaling Dampens Colitic Inflammation via Production of IFN-γ. The Journal of Immunology. July, 2016. DOI: 10.4049/​jimmunol.1600264. 

M. R. Lindsay, C. Anderson, N. Fox, G. Scofield, J. Allen, E. Anderson, L. Bueter, S. Poudel, K. Sutherland,J. H. Munson-McGee, J. D. Van Nostrand, J. Zhou, J. R. Spear, B. K. Baxter, D. R. Lageson, E. S. Boyd. Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah. Geobiology. 14 July 2016. DOI: 10.1111/gbi.12201

Letizia Crocetti, Igor A. Schepetkin, Giovanna Ciciani, Maria Paola Giovannoni, Gabriella Guerrini, Antonella Iacovone, Andrei I. Khlebnikov, Liliya N. Kirpotina, Mark T. Quinn and Claudia Vergelli. Synthesis and Pharmacological Evaluation of IndoleDerivatives as Deaza Analogues of Potent HumanNeutrophil Elastase Inhibitors. Wiley Online Library. July 2016. DOI: 10.1002/ddr.21323. 

Aixian Lan, Wenjun Li, Yao Liu, Zhaohui Xiong, Xinyan Zhang, Shanshan Zhou, Olesya Palko, Hao Chen, Mayanga Kapita, Justin R. Prigge, Edward E. Schmidt, Xin Chen, Zheng Sun, Xiaoxin Luke Chen. Chemoprevention of oxidative stress-associated oral carcinogenesis by sulforaphane depends on NRF2 and the isothiocyanate moiety. Oncotarget. July 2016. DOI: 10.18632/oncotarget.10609. 

Fermin E. Guerra, Conrad B. Addison, Nienke W. M. de Jong, Joseph Azzolino, Kyler B. Pallister, Jos (A. G.) van Strijp and Jovanka M. Voyich. Staphylococcus aureus SaeR/S-regulated factors reduce human neutrophil reactive oxygen species production. Journal of Leukocyte Biology.  June, 2016. DOI: 10.1189/jlb.4VMAB0316-100RR. 

Colman, D.R., J. Feyhl-Buska, K.J. Robinson, K.M. Fecteau, H. Xu, E.L. Shock,and E.S. Boyd. Ecological differentiation in planktonic and sediment-associated chemotrophic microbial communities in Yellowstone hot springs. FEMS Microb. Ecol. In press.

Lindsay, M.R., C. Anderson, N. Fox, G. Scofield, J. Allen,E. Anderson, L. Bueter, S. Poudel, K. Sutherland, J.H. Munson-McGee, J. Van Norstrand, J. Zhou, J.R. Spear, B.K. Baxter, D.R. Lageson, and E.S. Boyd. 2016. Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah. Geobiology. In press.

Shefah Qazi, Heini M. Miettinen, Royce A. Wilkinson, Kimberly McCoy, Trevor Douglas, and Blake Wiedenheft. Programmed Self-Assembly of an Active P22-Cas9 Nanocarrier System. ACS Publications: Molecular Pharmaceutics. 2016, 13 (3), pp 1191–1196. DOI: 10.1021/acs.molpharmaceut.5b00822.

Daniel J. Kao, Jordi M. Lanis, Erica Alexeev and Douglas J. Kominsky. HPLC-Based Metabolomic Analysis of Normal and Inflamed Gut. Gastrointestinal Physiology and Diseases. Volume 1422, June 2016. DOI: 10.1007/978-1-4939-3603-8_7. 

Daniel J. Kao, Jordi M. Lanis, Erica Alexeev and Douglas J. Kominsky. NMR-Based Metabolomic Analysis of Normal and Inflamed Gut. Gastrointestinal Physiology and Diseases. Volume 1422, June 2016. DOI: 10.1007/978-1-4939-3603-8_8.

Yoon-Suk Kang, Keenan Brame, Jonathan Jetter, Brian B. Bothner, Gejiao Wang, Saravanamuthu Thiyagarajan and Timothy R. McDermott. Regulatory Activities of Four ArsR Proteins in Agrobacterium tumefaciens 5A. Applies and Environmental Microbiology. June 2016, Vol. 82, no. 12. DOI: 10.1128/AEM.00262-16. 

Jodi F. Hedges, Amanda Robison, Emily Kimmel, Kelly Christensen, Erin Lucas, Andrew Ramstead and Mark A. Jutila. Type I Interferon Counters or Promotes Coxiella burnetii Replication Dependent on Tissue. Infection and Immunity. June 2016, vol. 84, no. 6. DOI: 10.1128/IAI.01540-15.

Claudia Vergelli, Igor A. Schepetkin, Giovanna Ciciani, Agostino Cilibrizzi, Letizia Crocetti, Maria Paola Giovannoni, Gabriella Guerrini, Antonella Iacovone, Liliya N. Kirpotina, Andrei I. Khlebnikov, Richard D. Ye, and Mark T. Quinn. 2-Arylacetamido-4-phenylamino-5-substituted pyridazinones as formyl peptide receptors agonists. Bioorganic & Medicinal Chemistry. Volume 24, Issue 11, 1 June 2016, Pages 2530–2543. DOI: 10.1016/j.bmc.2016.04.019

E Huarte, SangMu Jun, Agnieszka Rynda-Apple, Sara Golden, Larissa Jackiw, Carol Hoffman, Massimo Maddaloni, David W. Pascual. Regulatory T Cell Dysfunction Acquiesces to BTLA+ Regulatory B Cells Subsequent to Oral Intervention in Experimental Autoimmune Encephalomyelitis. The Journal of Immunology. June 2016. DOI: 10.4049/jimmunol.1501973

Igor A. Schepetkin, Andrew G. Ramstead, Liliya N. Kirpotina, Jovanka M. Voyich, Mark A. Jutila, Mark T. Quinn. Therapeutic Potential of Polyphenols from Epilobium Angustifolium (Fireweed). Phytotherapy Research. May 2016. DOI: 10.1002/ptr.5648.

Kelly M. Shepardson, Kyle Larson, Rachelle V. Morton, Justin R. Prigge, Edward E. Schmidt, Victor C. Huber, Agnieszka Rynda-Apple. Differential Type I Interferon Signaling Is a Master Regulator of Susceptibility to Postinfluenza Bacterial Superinfection. mBio. May 2016, Volume 7, no. 3. DOI: 10.1128/mBio.00506-16.

Ross P. Carlson, Olusegun Oshota, Matt Shipman, Justin A. Caserta, Ping Hu, Charles W. Saunders, Jun Xu, Zackary J. Jay, Nancy Reeder, Abigail Richards, Charles Pettigrew, Brent M. Peyton. Integrated molecular, physiological and in silico characterization of two Halomonas isolates from industrial brine. Extremophiles. May 2016, Volume 20, Issue 3, pp 261–274. DOI: 10.1007/s00792-015-0806-6. 

Michelle L. Luo, Ryan N. Jackson, Steven R. Denny, Monika Tokmina-Lukaszewska, Kenneth R. Maksimchuk, Wayne Lin, Brian Bothner, Blake Wiedenheft and Chase L. Beisel. The CRISPR RNA-guided surveillance complex in Escherichia coli accommodates extended RNA spacers. Nucleic Acids Research. May 2016. DOI: 10.1093/nar/gkw421.

Sean P. Colgan, Eric L. Campbell and Douglas J. Kominsky. Hypoxia and Mucosal Inflammation. Annual Review of Pathology: Mechanisms of Disease. Volume 11, May 2016, Pages 77-100. DOI: 10.1146/annurev-pathol-012615-044231.

Elliott P. Barnhart, Edwin P. Weeks, Elizabeth J.P. Jones, Daniel J. Ritter, Jennifer C. McIntosh, Arthur C. Clark, Leslie F. Ruppert, Alfred B. Cunningham, David S. Vinson, William Orem, Matthew W. Fields. Hydrogeochemistry and coal-associated bacterial populations from a methanogenic coal bed. International Journal of Coal Geology. Volume 162, May 2016, Pages 14-26. DOI: 10.1016/j.coal.2016.05.001.

Philipp Engel,Waldan K. Kwong,Quinn McFrederick, Kirk E. Anderson, Seth Michael Barribeau, James Angus Chandler, R. Scott Cornman, Jacques Dainat, Joachim R. de Miranda, Vincent Doublet, Olivier Emery, Jay D. Evans, Laurent Farinelli, Michelle L. Flenniken, Fredrik Granberg, Juris A. Grasis, Laurent Gauthier, Juliette Hayer, Hauke Koch, Sarah Kocher, Vincent G. Martinson, Nancy Moran, Monica Munoz-Torres, Irene Newton, Robert J. Paxton, Eli Powell, Ben M. Sadd, Paul Schmid-Hempel, Regula Schmid-Hempel, Se Jin Song, Ryan S. Schwarz, Dennis van Engelsdorp, Benjamin Dainat. The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions. American Society for Microbiology MBIO. April 2016. DOI: 10.1128/mBio.02164-15. 

John W Peters, Anne-Frances Miller, Anne K Jones, Paul W King and Michael WW Adams. Electron bifurcation. Current Opinion in Chemical Biology. Volume 31, April 2016, Pages 146-152. DOI: 10.1016/j.cbpa.2016.03.007.

Naomi Tanaka, Danah Ashour, Edward Dratz, and Sandra Halonen. Use of human induced pluripotent stem cell-derived neurons as a model for Cerebral Toxoplasmosis. Microbes and Infection. 12 April 2016. DOI: 10.1016/j.micinf.2016.03.012

James C. Harms, Sunil Rangarajan, Carlton J. Young, Jill Barker-Finkel, and Michael Allon. Outcomes of arteriovenous fistulas and grafts with or without intervention before successful use. Journal of Vascular Surgery. 8 April 2016. DOI: 10.1016/j.jvs.2016.02.033.

Dmitriy N. Atochin, Igor A. Schepetkin, Andrei I. Khlebnikov, Victor I. Seledtsov,  Helen Swanson,  Mark T. Quinn, and Paul L. Huanga. A novel dual NO-donating oxime and c-Jun N-terminal kinase inhibitor protects against cerebral ischemia–reperfusion injury in mice. Neuroscience Letters. Volume 618, 8 April 2016, Pages 45–49. DOI: 10.1016/j.neulet.2016.02.033

Criddle, T. Thornburg, I. Kochetkova, M. DePartee, M. P. Taylor, and R. M. Sandri-Goldin. gD-Independent Superinfection Exclusion of Alphaherpesviruses. Journal of Virology. April 2016, vol. 90, no. 8. DOI: 10.1128/JVI.00089-16.

R. S. Hindshaw, S. Q. Lang, S. M. Bernasconi, T. H. E. Heaton, M. R. Lindsay, E. S. Boyd. Origin and temporal variability of unusually low δ¹³C-DOC values in two High Arctic catchments. Journal of Geophysical Research, Biogeosciences. April 2016. DOI: 10.1002/2015JG003303. 

Stephen R Lindemann, Hans C Bernstein, Hyun-Seob Song, Jim K Fredrickson, Matthew W Fields, Wenying Shou, David R Johnson and Alexander S Beliaev. Engineering microbial consortia for controllable outputs. The ISME Journal. March 2016. DOI: 10.1038/ismej.2016.26

Lorenzo Di Cesare Mannelli, Laura Micheli, Lorenzo Cinci, Mario Maresca, Claudia Vergelli, Alessandra Pacini, Mark T. Quinn, Maria Paola Giovannoni, and Carla Ghelardini. Effects of the neutrophil elastase inhibitor EL-17 in rat adjuvant-induced arthritis. Rheumatology. March 2016. DOI: 10.1093/rheumatology/kew055. 

Matthew R. Urschel, Trinity L. Hamilton, Eric E. Roden, Eric S. Boyd.Substrate preference, uptake kinetics and bioenergetics in a facultatively autotrophic, thermoacidophilic crenarchaeote. FEMS Microbiology Ecology. March 2016. DOI: 10.1093/femsec/fiw069. 

Ian Cavigli, Katie F. Daughenbaugh, Madison Martin, Michael Lerch, Katie Banner, Emma Garcia, Laura Brutscher, Michelle L. Flenniken.Pathogen prevalence and abundance in honey bee colonies involved in almond pollination. Apidologie. March 2016, Volume 47, Issue 2, pp 251–266. DOI: 10.1007/s13592-015-0395-5. 

Jodi F. Hedges, Jeff Holderness, Mark A. Jutila. Adjuvant materials that enhance bovine γδ T cell responses. Veterinary Immunology and Immunopathology. 17 March 2016. DOI: 10.1016/j.vetimm.2016.03.010

James Moberly, Seth D'Imperio, Albert Parker, and Brent Peyton. Microbial community signature in Lake Coeur d’Alene: Association of environmental variables and toxic heavy metal phases. Applied Geochemistry. Volume 66, March 2016, Pages 174–183. DOI: 10.1016/j.apgeochem.2015.12.013

Fortney, N.W., B.J. Converse, S. He, B.L. Beard, C.M. Johnson, E.S. Boyd, and E.E. Roden. 2016. Microbial Fe(III) oxide reduction potential in Chocolate Pots, Yellowstone National Park. Geobiol. In press. DOI: 10.1111/gbi.12173.

Harrold, Z., M.L. Skidmore, T.L. Hamilton, L. Desch,  K. Amada, W. van Gelder, K. Glover, E.E. Roden, and E.S. Boyd. 2016. Aerobic and anaerobic thiosulfate oxidation by a cold-adapted, subglacial chemoautotroph. Appl. Environ. Microbiol. 82: 1486-1495. DOI: 10.1128/AEM.03398-15.  

Hochstein, R., M.J. Amenabar, J. Munson-McGee, E.S. Boyd, and M. Young. 2016. Acidianus tailed spindle virus: a new large tailed spindle virus discovered by culture-independent methods.  J. Virology. In press. DOI: 10.1128/JVI.03098-15.

Schut, G.J., O.A. Zadvornyy, J.W. Peters, E.S. Boyd, and M.W.W. Adams. 2016. The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor. Biochem. Biophys. Acta-Bioenergetics. In press. DOI: 10.1016/j.bbabio.2016.01.010.

Hindshaw, R.S., S.Q. Lang, M.R. Lindsay, and E.S. Boyd. 2016. Origin and temporal variability of unusually low δ13C DOC values in two high arctic catchments.  J. Geol. Res. – Biogeosci. In press. DOI: 10.1002/2015JG003303.

Druschel, G., G. Dick, and E. Boyd. 2016. 2014 Geomicrobiology and Geochemistry Workshop Report. DOI: 10.6084/m9.figshare.3083524. 

Urschel, M.R., T.L. Hamilton, E.E. Roden, and E.S. Boyd. 2016. Substrate preference, uptake kinetics, and energetics in a facultatively autotrophic, thermoacidiphilic crenarchaeote. FEMS Microb. Ecol. 92. fiw069. DOI: 10.1093/femsec/fiw069.  

Poudel, S., M. Tokmina-Lukaszewska, D.R. Colman, M. Refai, G.J. Schut, P.W. King, P.-C. Maness, M.W.W. Adams, J.W. Peters, B. Bothner and E.S. Boyd. Unification of [FeFe]-hydrogenases into three structural and functional groups. Biochem. Biophys. Acta.  In press. DOI: 10.1016/j.bbagen.2016.05.034.  

Jose Ignacio Moncayo, Jenna Samara Luligo Espinal, Jorge Javier Santacruz Ibarra, Adalucy Álvarez Aldana. Relationship between super antigenicity, antimicrobial resistance and origin of staphylococcus aureus isolated. Columbia Médica. February 2016, volume 47, no. 1. 

Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Grégory Jubelin, Carl J. Yeoman, Margret E. Berg Miller, Christopher J. Fields, Nicolas Terrapon, Carine Le Bourvellec, Catherine M.G.C. Renard, Bernard Henrissat, Bryan A. White and Pascale Mosoni. Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. BMC Genomics. February 2016. DOI: 10.1186/s12864-016-2472-1. 

Jinjun Kan, Scott Clingenpeel, Charles L. Dow, Timothy R. McDermott, Richard E. Macur, William P. Inskeep and Kenneth H. Nealson. Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake. Frontiers in Microbiology. February 2016. DOI: 10.3389/fmicb.2016.00210.

Robert P. Hayes, Yibei Xiao, Fran Ding, Paul B. G. van Erp, Kanagalaghatta Rajashankar, Scott Bailey, Blake Wiedenheft, Ailong Ke. Structural basis for promiscuous PAM recognition in type I–E Cascade from E. coli. Nature. 25 February 2016. DOI: 10.1038/nature16995.

Melanie C. Melendrez, Eric D. Becraft, Jason M. Wood, Millie T. Olson, Donald A. Bryant, John F. Heidelberg, Douglas B. Rusch, Frederick M. Cohan, David M. Ward. Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat. Frontiers in Microbiology. 14 January 2016. DOI: 0.3389/fmicb.2015.01540. 

Heidi J. Smith, Christine M. Foreman, Tatsuya Akiyama, Michael J. Franklin, Nicolas P. Devitt, Thiruvarangan Ramaraj. Genome Sequence of Janthinobacterium sp. CG23_2, a Violacein-Producing Isolate from an Antarctic Supraglacial Stream. Genome Announcements. January/February 2016, Volume 4, Number 1. DOI: 10.1128/genomeA.01468-15.

Zoë R. Harrold, Mark L. Skidmore, Trinity L. Hamilton, Libby Desch, Kirina Amada, Will van Gelder, Kevin Glover, Eric E. Roden, Eric S. Boyd. Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph. Applied and Environmental Microbiology. March 2016, Volume 82, Number 5. DOI: 10.1128/AEM.03398-15.

Tisza A. S. Bell, Bharath Prithiviraj, Brad D. Wahlen, Matthew W. Fields, Brent M. Peyton. A Lipid-Accumulating Alga Maintains Growth in Outdoor, Alkaliphilic Raceway Pond with Mixed Microbial Communities. Frontiers in Microbiology. 7 January 2016. DOI: 10.3389/fmicb.2015.01480

Darius Cepauskas, Inga Miliute, Grazina Staniene, Dalia Gelvonauskiene, Vidmantas Stanys, Algirdas J. Jesaitis, Danas Baniulis.Characterization of apple NADPH oxidase genes and their expression associated with oxidative stress in shoot culture in vitro. Plant cell, Tissue and Organ Culture. March 2016, Volume 124, Issue 3, pp 621-633. DOI: 10.1007/s11240-015-0920-2.

A. Criddle, T. Thornburg, I. Kochetkova, M. DePartee and M.P. Taylor.  gD-independent superinfection exclusion of alphaherpesviruses.  Journal of Virology. 3 February 2016, DOI: 10.1128/JVI.00089-16.

Chris Organ, Mikayla Struble, Aurore Canoville, Vivian de Buffrénil, Michel Laurin.  Macroevolution of genome size in sarcopterygians during the water–land transition.  Comptes Rendus Palevol.  Volume 15, Issues 1–2, January 2016, Pages 65–73. DOI: 10.1016/j.crpv.2015.09.003.

James Moberly , Seth D'Imperio, Albert Parker, Brent Peyton.  Microbial community signature in Lake Coeur d’Alene: Association of environmental variables and toxic heavy metal phases.  Applied Geochemistry. Volume 66, March 2016, Pages 174–183.  DOI: 10.1016/j.apgeochem.2015.12.013.

Thomas J. O'Shea, Paul M. Cryan, David T.S. Hayman, Raina K. Plowright,  and Daniel G. Streicker.  Multiple mortality events in bats: a global review.  Mammal Review.  18 January, 2016.  DOI: 10.1111/mam.12064

Gerrit J. Schut, Oleg Zadvornyy, Chang-Hao Wu, John W. Peters, Eric S. Boyd, Michael W.W. Adams.  The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor.  Biochimica et Biophysica Acta (BBA) – Bioenergetics.  22 January 2016.  DOI: 10.1016/j.bbabio.2016.01.010.

Dan W. Siemsen, Erin Dobrinen, Soo Han, Kari Chiocchi, Nicole Meissner, Steve D. Swain.  Vascular Dysfunction in Pneumocystis-Associated Pulmonary Hypertension Is Related to Endothelin Response and Adrenomedullin Concentration.  The American Journal of Pathology.  Volume 186, Issue 2, February 2016, Pages 259–269.  DOI: 10.1016/j.ajpath.2015.10.008.

Andrew G. Ramstead, Amanda Robison, Anne Blackwell, Maria Jerome,Brett Freedman, Kirk J. Lubick, Jodi F. Hedges and Mark A. Jutila. Roles of Toll-Like Receptor 2 (TLR2), TLR4, and MyD88 during Pulmonary Coxiella burnetii Infection. Infection and Immunity. Volume 84, January 2016

Thomas J. O'Shea, Paul M. Cryan, David T.S. Hayman, Raina K. Plowright, Daniel G. Streicker. Multiple mortality events in bats: a global review. Mammal Review. January 2016. DOI: 10.1111/mam.12064

Paul C. Jordan, Dustin P. Patterson, Kendall N. Saboda, Ethan J. Edwards, Heini M. Miettinen, Gautam Basu, Megan C. Thielges and Trevor Douglas. Self-assembling biomolecular catalysts for hydrogen production. Nature Chemistry. 2016. DOI: 10.1038/nchem.2416. 

2015

Nikki Dellas, Jamie C. Snyder, Michael Dills, Sheena J. Nicolay, Keshia M. Kerchner, Susan K. Brumfield, C. Martin Lawrence, Mark J. Young. Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase. Journal of Virology. Volume 90, Number 6. 23 December 2015. DOI: 10.1128/JVI.02435-15

Laura M. Brutscherand Michelle L. Flenniken. RNAi and Antiviral Defense in the Honey Bee. Journal of Immunology Research. 29 November 2015. Volume 2015, Article ID 941897, 10 pages. DOI: 10.1155/2015/941897.

Timothy Hamerly, Brian Tripet, Louie Wurch, Robert L. Hettich, Mircea Podar, Brian Bothner, Valérie Copié. Characterization of Fatty Acids in Crenarchaeota by GC-MS and NMR. Archaea. 2 December 2015. Volume 2015, Article ID 472726, 9 pages. DOI: 10.115/2015/472726.

Aifen Zhou, Kristina L Hillesland, Zhili He, Wendy Schackwitz, Qichao Tu, Grant M Zane, Qiao Ma, Yuanyuan Qu, David A. Stahl, Judy D. Wall, Terry C. Hazen, Matthew W. Fields, Adam P. Arkin1, and Jizhong Zhou.  Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.  The ISME Journal 9, 2360–2372; doi:10.1038/ismej.2015.45; published online 7 April 2015.

Ryan N Jackson, Airlie J McCoy, Thomas C Terwilliger, Randy J Read, and Blake Wiedenheft.  X-ray structure determination using low-resolution electron microscopy maps for molecular replacement.  Nature Protocols.  10, 1275–1284  (2015).  doi:10.1038/nprot.2015.069.

Ping Zhang, Joy D. Van Nostrand, Zhili He, Romy Chakraborty, Ye Deng, Daniel Curtis, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, and Jizhong Zhou.  A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction.  Environmental Science and Technology. April 02, 2015, 49 (21), pp 12922–12931. DOI: 10.1021/acs.est.5b00024.

Katherine R. Amato,Carl J. Yeoman, Gabriela Cerda, Christopher A. Schmitt, Jennifer Danzy Cramer, Margret E. Berg Miller, Andres Gomez, Trudy R. Turner, Brenda A. Wilson, Rebecca M. Stumpf, Karen E. Nelson, Bryan A. White, Rob Knight and Steven R. Leigh.  Variable responses of human and non-human primate gut microbiomes to a Western diet.  Microbiome 2015 3:53.  DOI: 10.1186/s40168-015-0120-7.

Sy Redding, Samuel H. Sternberg, Myles Marshall, Bryan Gibb, Prashant Bhat, Chantal K. Guegler, Blake Wiedenheft, Jennifer A. Doudna, Eric C. Greene.  Surveillance and Processing of Foreign DNA by the Escherichia coli CRISPR-Cas System.  Cell.  Volume 163, Issue 4, 5 November 2015, Pages 854–865.  doi:10.1016/j.cell.2015.10.003. 

Justin R. Prigge, Teri R. Hoyt, Erin Dobrinen, Mario R. Capecchi, Edward E. Schmidt, Nicole Meissner.  Type I IFNs Act upon Hematopoietic Progenitors To Protect & Maintain Hematopoiesis during Pneumocystis Lung Infection in Mice.  Journal of Immunology. 2015 Dec 1;195(11):5347-57. doi: 10.4049/jimmunol.1501553.

Peipoch M, Jones R, Valett HM (2015)Spatial Patterns in Biofilm Diversity across Hierarchical Levels of River-Floodplain Landscapes. PLoS ONE 10(12): e0144303. doi:10.1371/journal.pone.0144303

Ruth S. Hindshaw, Tim H.E. Heaton, Eric S. Boyd, Melody R. Lindsay, Edward T. Tipper.  Influence of glaciation on mechanisms of mineral weathering in two high Arctic catchments.  Chemical Geology.  Volume 420, 20 January 2016, Pages 37–50.  doi:10.1016/j.chemgeo.2015.11.004.

Deborah Keil, Brenda Buck, Dirk Goossens, Yuanxin Teng, Mallory Leetham, Lacey Murphy, James Pollard, Margaret Eggers, Brett McLaurin, Russell Gerads, Jamie DeWitt.  Immunotoxicological and neurotoxicological profile of health effects following subacute exposure to geogenic dust from sand dunes at the Nellis Dunes Recreation Area, Las Vegas, NV.  Toxicology and Applied Pharmacology.  Volume 291, 15 January 2016, Pages 1–12.  doi:10.1016/j.taap.2015.11.020

Deborah E. Keil.  Immunotoxicity of Perfluoroalkylated Compounds.  Toxicological Effects of Perfluoroalkyl and Polyfluoroalkyl Substances.  pp 239-248.  2015.  10.1007/978-3-319-15518-0_10

Christopher L. Hemme, Qichao Tu, Zhou Shi, Yujia Qin, Weimin Gao, Ye Deng, Joy D. Van Nostrand, Liyou Wu, Zhili He, Patrick S. G. Chain, Susannah G. Tringe, Matthew W. Fields, Edward M. Rubin, James M. Tiedje, Terry C. Hazen, Adam P. Arkin and Jizhong Zhou.  Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.  Frontiers in Microbiology.   6:1205. doi: 10.3389/fmicb.2015.01205

Daria Vorontsova, Kirill A. Datsenko, Sofia Medvedeva, Joseph Bondy-Denomy, Ekaterina E. Savitskaya, Ksenia Pougach, Maria Logacheva, Blake Wiedenheft, Alan R. Davidson, Konstantin Severinov and Ekaterina Semenova.  Foreign DNA acquisition by the I-F CRISPR–Cas system requires all components of the interference machinery.  Nucleaic Acids Research. 15 December 2015.  Volume 43, Issue 22, pp 10848-10860. doi: 10.1093/nar/gkv126

Cebula Marcus, Schmidt Edward E., and Arnér Elias S.J.. Antioxidants & Redox Signaling. October 1, 2015, 23(10): 823-853. doi:10.1089/ars.2015.6378.

Luis O’mar Serrano Figueroa , Benjamin Schwarz, Abigail M. Richards. 2015.  Structural characterization of amphiphilic siderophores produced by a soda lake isolate, Halomonas sp. SL01, reveals cysteine-, phenylalanine- and proline-containing head groups.  Extremophiles.  November 2015, Volume 19, Issue 6, pp 1183-1192.  doi: 10.1007/s00792-015-0790-x.

Soley Ruth Gudbergsdottir, Peter Menzel, Anders Krogh, Mark Young, Xu Peng.  2015.  Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses & high viral diversity in terrestrial hot springs.  Environmental Microbiology.  2015 Oct 6. doi: 10.1111/1462-2920.13079.

Ryan Thomas Jones , Jeff Borchert, Rebecca Eisen, Katherine MacMillan, Karen Boegler, Kenneth L. Gage.  2015.  Flea-Associated Bacterial Communities across an Environmental Transect in a Plague-Endemic Region of Uganda.  Plos.  Published: October 20, 201 Flea-Associated Bacterial Communities across an Environmental Transect in a Plague-Endemic Region of Uganda DOI:10.1371/journal.pone.0141057.

Jacob H. Munson-McGee, Erin K. Field, Mary Bateson, Colleen Rooney, Ramunas Stepanauskas and Mark J. Young, K. E. Wommack, Editor.  Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs.  Applied and Environmental Microbiology.  November 2015 vol. 81 no. 22 7860-7868.  doi: 10.1128/AEM.01539-15.

Joseph Bondy-Denomy, Bianca Garcia, Scott Strum, Mingjian Du, MaryClare F. Rollins, Yurima Hidalgo-Reyes, Blake Wiedenheft, Karen L. Maxwell, and Alan R. Davidson. 2015.  Multiple mechanisms for CRISPR–Cas inhibition by anti-CRISPR proteins.  Nature. 526, 136–139 (01 October 2015)  doi:10.1038/nature15254.

Chris L. Organ, Lisa Noelle Cooper, and Tobin L. Hieronymus. 2015.  Macroevolutionary developmental biology: Embryos, fossils, and phylogenies.  Developmental Dynamics. Volume 244, Issue 10, pages 1184–1192, October 2015.  DOI: 10.1002/dvdy.24318

Philip S. Stewart. 2015.  Prospects for Anti-Biofilm Pharmaceuticals.  Pharmaceuticals.  2015, 8(3), 504-511; doi:10.3390/ph8030504. 

Kyler B. Pallister,  Sara Mason,  Tyler K. Nygaard,  Bin Liu,  Shannon Griffith,  Jennifer Jones,  Susanne Linderman,  Melissa Hughes,  David Erickson,  Jovanka M. Voyich,  Mary F. Davis,  Eric Wilson.  2015.  Bovine CCL28 Mediates Chemotaxis via CCR10 and Demonstrates Direct Antimicrobial Activity against Mastitis Causing Bacteria.  Plos One.  September 11, 2015.  DOI: 10.1371/journal.pone.0138084. 

Brandy D. Stewart, A. Cristina Cismasu, Kenneth H. Williams, Brent M. Peyton, and Peter S. Nico.  2015.  Reactivity of Uranium and Ferrous Iron with Natural Iron Oxyhydroxides.  Environmental Science and Technology.  2015, 49 (17), pp 10357–10365.  DOI: 10.1021/acs.est.5b02645.

Samuel L. Aitken, M. Jahangir Alam, Mohammed Khaleduzzuman, Seth T. Walk, William L. Musick, Vy P. Pham, Jennifer L. Christensen, Robert L. Atmar, Yang Xie and Kevin W. Garey.  2015.  In the Endemic Setting, Clostridium difficile Ribotype 027 Is Virulent But Not Hypervirulent.  Infection Control & Hospital Epidemiology.  / Volume 36 / Issue 11 / November 2015, pp 1318-1323.  doi:10.1038/srep12666. 

Lisa Selzer, Ravi Kant, Joseph C-Y Wang, Brian Bothner and Adam Zlotnick.  2015.  Hepatitis B Virus Core Protein Phosphorylation Sites Affect Capsid Stability and Transient Exposure of the C-terminal Domain.  The Journal Of Biological Chemistry.  2015 Sep 24. doi: 10.1074/jbc.M115.678441.

Tiffanie M. Nelson, Joanna-Lynn C. Borgogna, Rebecca M. Brotman, Jacques Ravel, Seth T. Walk and Carl J. Yeoman.  Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?  Frontiers in Physiology.  29 September 2015 |
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Kara B. De León,  Sagar M. Utturkar, Laura B. Camilleri, Dwayne A. Elias, Adam P. Arkin, Matthew W. Fields, Steven D. Brown, Judy D. Wall. 2015.  Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.     Genome Announcements.  September/October 2015   vol. 3  no. 5  e01090-15.  doi: 10.1128/genomeA.01090-15. 

Krishna Rao, Dejan Micic, Mukil Natarajan, Spencer Winters, Mark J. Kiel, Seth T. Walk, Kavitha Santhosh, Jill A. Mogle, Andrzej T. Galecki, William LeBar, Peter D. R. Higgins, Vincent B. Young, and David M. Aronoff.  2015.  Clostridium difficile Ribotype 027: Relationship to Age, Detectability of Toxins A or B in Stool With Rapid Testing, Severe Infection, and Mortality.  Clinical Infectious Diseases.  Volume 61,  Issue 2 Pp.  233-241.  DOI: 10.1093/cid/civ254.

Mark D. Kleven, Mensur Dlakić and C. Martin Lawrence. 2015.  Characterization of a Single b-type Heme, FAD, and Metal Binding Sites in the Transmembrane Domain of Six-transmembrane Epithelial Antigen of the Prostate (STEAP) Family Proteins.  The Journal of Biological Chemistry.  2015 Sep 11;290(37):22558-69. DOI: 10.1074/jbc.M115.664565.

Igor A. Schepetkin, Andrei I. Khlebnikov, Liliya N. Kirpotina, Mark T. Quinn. 2015.  Antagonism of human formyl peptide receptor 1 with natural compounds and their synthetic derivatives.  International Immunopharmacology.  2015 Sep 14. pii: S1567-5769(15)30095-3. DOI: 10.1016/j.intimp.2015.08.036.

Ryan N Jackson, Airlie J McCoy, Thomas C Terwilliger, Randy J Read, Blake Wiedenheft.  X-ray structure determination using low-resolution electron microscopy maps for molecular replacement.  Nature Protocols. 10, 1275–1284 (2015) DOI: 10.1038/nprot.2015.069, Published online  30 July 2015.

Guanghui Liu, Wenchao Feng, Dengfeng Li,  Mengyao Liu, Daniel C. Nelson and Benfang Lei.  The Mga Regulon but not Deoxyribonuclease Sda1 of Invasive M1T1 Group A Streptococcus Contributes to in vivo Selection of CovRS Mutations and Resistance to Innate Immune Killing Mechanisms. Infection and Immunity.  Accepted manuscript posted online 17 August 2015, DOI: 10.1128/IAI.00857-15.

Benjamin Bolduc, Jennifer F Wirth, Aurélien Mazurie and Mark J Young.2015.  Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis. The ISME Journal (2015) 9, 2162–2177; DOI: 10.1038/ismej.2015.28; published online 30 June 2015. 

Andres Gomez, Jessica M Rothman, Klara Petrzelkova, Carl J Yeoman, Klara Vlckova, Juan D Umaña, Monica Carr, David Modry, Angelique Todd, Manolito Torralba, Karen E Nelson, Rebecca M Stumpf, Brenda A Wilson, Ran Blekhman, Bryan A White and Steven R Leigh. 2015. Temporal variation selects for diet–microbe co-metabolic traits in the gut of Gorilla spp.  The ISME Journal advance online publication, 28 August 2015; DOI: 10.1038/ismej.2015.146.

Kathleen Boesze-Battaglia,  Lisa P. Walker, Ali Zekavat,  Mensur Dlakić,  Monika Damek Scuron,  Patrik Nygren and  Bruce J. Shenker, S. R. Blanke, Editor.  2015.  The Aggregatibacter actinomycetemcomitans Cytolethal Distending Toxin Active Subunit CdtB Contains a Cholesterol Recognition Sequence Required for Toxin Binding and Subunit Internalization.  Infection and Immunity. October 2015.  vol. 83  no. 10  4042-4055. DOI: 10.1128/IAI.00788-15. 

R. J. VanKempen-Fryling, O. R. Stein, Anne K. Camper.  2015.  Presence and persistence of wastewater pathogen Escherichia coli O157:H7 in hydroponic reactors of treatment wetland species.  Water Science & Technologoy.  Vol 72, No 1, pp 135–140, 2015, DOI: 10.2166/wst.2015.199.

Keith E. Cooksey.  Regulation of the initial events in microalgal triacylglycerol (TAG) synthesis: hypotheses.  Journal of Applied Phycology.  August 2015, Volume 27, Issue 4, pp 1385-1387. DOI: 10.1007/s10811-014-0461-9.

Elliott P. Barnhart, Marcella A. McClure, Kiki Johnson, Sean Cleveland, Kristopher A. Hunt & Matthew W. Fields.  2015.  Potential Role of Acetyl-CoA Synthetase (acs) and Malate Dehydrogenase (mae) in the Evolution of the Acetate Switch in Bacteria and Archaea.  Scientific Reports 5, Article number: 12498 (2015). DOI: 10.1038/srep12498.

Maria Paola Giovannoni, Igor A. Scheptkin, Letizia Crocetti, Giovanna Ciciani, Agostino Cilibrizzi, Gabriella Guerrini, Andrei I. Khlebnikov, Mark T. Quinn, and Claudia Vergelli. Cinnoline derivatives as human neutrophil elastase inhibitors. Journal of Enzyme Inhibition and Medicinal Chemistry. July 2015, Pages 628-639. DOI: 10.3109/14756366.2015.1057718.

Sarah E. Mailhiot, Donald L. Zignego, Justin R. Prigge, Ella R. Wardwell, Edward E. Schmidt, Ronald K. Non-Invasive Quantification of Cartilage Using a Novel In Vivo Bioluminescent Reporter Mouse. Plos One. July  2015. DOI: 10.1371/journal.pone.0130564.

Han-Ching Tseng, Aida Arasteh, Kawaljit Kaur, Anna Kozlowska, Paytsar Topchyan and Anahid Jewett. Differential cytotoxicity but augmented IFN-γ secretion by NK cells after interaction with monocytes from humans, and those from wild type and myeloid-specific COX-2 knockout mice. Frontiers in Immunology. June 2015. DOI: 10.3389/fimmu.2015.00259

Gerardo Martin, Raina Plowright, Carla Chen, David Kault, Paul Selleck, Lee F. Skerratt.  Hendra virus survival does not explain spillover patterns and implicates relatively direct transmission routes from flying foxes to horses.  Journal of General Virology. June 2015, 96: 1229-1237,  DOI: 10.1099/vir.0.000073.

Paul B.G. van Erp, Ryan N. Jackson, Joshua Carter, Sarah M. Golden, Scott Bailey and Blake Wiedenheft. Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli. Nucleic Acids Research.  (30 September 2015)   43  (17):  8381-8391. DOIi: 10.1093/nar/gkv793. 

Chris L. Organ, Lisa Noelle Cooper Tobin L. Hieronymus.  Macroevolutionary developmental biology: Embryos, fossils, and phylogenies. Developmental Dynamics. Volume 244, Issue 10,  pages 1184–1192, October 2015. DOI: 10.1002/dvdy.24318. 

Rebecca Hochstein, Daniel Bollschweiler, Harald Engelhardt,  C. Martin Lawrence, and  Mark Young. Large Tailed Spindle Viruses of Archaea: a New Way of Doing Viral Business.  Journal of Virology. September 2015, vol. 89,  no. 18, 9146-9149. DOI: 10.1128/JVI.00612-15. 

Agnieszka Rynda-Apple, Keven M. Robinson and John F. Alcorn. H. L. Andrews-Polymenis, Editor. Influenza and Bacterial Superinfection: Illuminating the Immunologic Mechanisms of Disease.  Infection and Immunity.  October 2015, vol. 83, no.10, 3764-3770. DOI: 10.1128/IAI.00298-15.

Paul B.G. van Erp,  Ryan N. Jackson,Joshua Carter, Sarah M. Golden, Scott Bailey and Blake Wiedenheft. Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli. Nucleic Acids Research. 30 September 2015)  43  (17):  8381-8391.  DOI: 10.1093/nar/gkv793.

Inna Rozman Grinberg, Guohua Yin, Ilya Borovok, Margret E. Berg Miller, Carl J. Yeoman, Bareket Dassa, Zhongtang Yu, Itzhak Mizrahi, Harry J. Flint, Edward A. Bayer, Bryan A. White, Raphael Lamed. Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.  FEMS Microbiology Letters. 2015 Jan; 362(3):1-10. DOI: 10.1093/femsle/fnu047.

Jacob H. Artz, Spencer N. White, Oleg A. Zadvornyy, Corey J. Fugate, Danny Hicks, George H. Gauss, Matthew C. Posewitz, Eric S. Boyd, and John W. Peters. Biochemical and structural properties of a thermostable mercuric ion reductase from Metallosphaera sedula. Frontiers in Bioengineering and Biotechnology. 13 July 2015. DOI: 10.3389/fbioe.2015.00097.

Qian Wang, Dong Qin, Shengzhe Zhang, Lu Wang, Jingxin Li, Christopher Rensing, Timothy R. McDermott, and Gejiao Wang. Fate of arsenate following arsenite oxidation in Agrobacterium tumefaciens GW4. Environmental Microbiology. Volume 17, Issue 6,  pages 1926–1940, June 2015. DOI: 10.1111/1462-2920.12465.

Courtney R. Plumlee, Joshua J. Obar, Sara L. Colpitts, Evan R. Jellison, W. Nicholas Haining, Leo Lefrancois and Kamal M. Khanna.  Early Effector CD8 T Cells Display Plasticity in Populating the Short-Lived Effector and Memory-Precursor Pools Following Bacterial or Viral Infection. Scientific Reports. Epub: 20 July 2015. 12264 (2015). DOI: 10.1038/srep12264.

Peter Menzel, Sóley Ruth Gudbergsdóttir, Anne Gunn Rike, Lianbing Lin, Qi Zhang, Patrizia Contursi, Marco Moracci, Jakob K. Kristjansson, Benjamin Bolduc, Sergey Gavrilov, Nikolai Ravin, Andrey Mardanov, Elizaveta Bonch-Osmolovskaya, Mark Young, Anders Krogh, Xu Peng. Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs. Microbial Ecology. August 2015, Volume 70, Issue 2, pp 411-424. DOI: 10.1007/s00248-015-0576-9.

Mark D. Kleven, Mensur Dlakić, and C. Martin Lawrence. 2015. Characterization of a Single b-type Heme, FAD, and Metal Binding Sites in the Transmembrane Domain of Six-transmembrane Epithelial Antigen of the Prostate (STEAP) Family Proteins. The Journal for Biological Chemistry. September 11, 2015. 290, 22558-22569. DOI: 10.1074/jbc.M115.664565

Aaron D. Schuler, Courtney A. Engles, Dean Y. Maeda, Mark T. Quinn, Liliya N. Kirpotina, Winston N. Wicomb, S. Nicholas Mason, Richard L. Auten, John A. Zebala.  2015.  Boronic acid-containing aminopyridine- and aminopyrimidinecarboxamide CXCR1/2 antagonists: Optimization of aqueous solubility and oral bioavailability. Bioorganic & Medicinal Chemistry Letters. Volume 25, Issue 18, 15 September 2015, Pages 3793–3797. DOI:10.1016/j.bmcl.2015.07.090.

Edward E. Schmidt.  2015.  Interplay between cytosolic disulfide reductase systems and the Nrf2/Keap1 pathway. Biochemical Society Transactions. Aug 03, 2015, 43 (4) 632-638; DOI: 10.1042/BST20150021.

Katie F. Daughenbaugh, Madison Martin,  Laura M. Brutscher, Ian Cavigli ,  Emma Garcia ,  Matt Lavin and  Michelle L. Flenniken.  Honey Bee Infecting Lake Sinai Viruses. Viruses. 2015, 7(6), 3285-3309. DOI:10.3390/v7062772.

R. Kratchmarova, L. W. Enquista, M. P. Taylor, M. Sandri-Goldin, Editor. Us9-Independent Axonal Sorting and Transport of the Pseudorabies Virus Glycoprotein gM.  June 2015, vol. 89, no. 12, 6511-6514. DOI: 10.1128/JVI.00625-15.

Paul BG van Erp, Gary Bloomer, Royce Wilkinson, Blake Wiedenheft. The history and market impact of CRISPR RNA-guided nucleases.  Current Opinion in Virology. Volume 12, June 2015, Pages 85–90. DOI: 10.1016/j.coviro.2015.03.011.

Jingxin Li, Qian Wang, Mingshun Li, Birong Yang, Manman Shi, Wei Guo, Timothy R. McDermott, Christopher Rensing, and Gejiao Wang.  2015.  Proteomics and Genetics for Identification of a Bacterial Antimonite Oxidase in Agrobacterium tumefaciens. Environmental Science & Technology. 2015, 49 (10), pp 5980–5989. DOI: 10.1021/es506318b.

Zachary W. Stetzner, Dengfeng Li, Wenchao Feng, Mengyao Liu, Guanghui Liu, James Wiley, Benfang Lei. Serotype M3 and M28 Group A Streptococci Have Distinct Capacities to Evade Neutrophil and TNF-α Responses and to Invade Soft Tissues. Plos One. June 5, 2015.  DOI: 10.1371/journal.pone.0129417.

Jenna Crowell, James A. Wiley, Richard A. Bessen. 2015. Lesion of the Olfactory Epithelium Accelerates Prion Neuroinvasion and Disease Onset when Prion Replication Is Restricted to Neurons. Plos One. March 30, 2015. DOI: 10.1371/journal.pone.0119863.

Karen M. Kapheim, Vikyath D. Ra, Carl J. Yeoman, Brenda A. Wilson, Bryan A. White, Nigel Goldenfeld, Gene E. Robinson. 2015. Caste-Specific Differences in Hindgut Microbial Communities of Honey Bees (Apis mellifera). Plos One. April 15, 2015.  DOI: 10.1371/journal.pone.0123911.

Yoon-Suk Kang, Zunji Shi, Brian Bothner, Gejiao Wang and Timothy R. McDermott. Involvement of the Acr3 and DctA anti-porters in arsenite oxidation in Agrobacterium tumefaciens 5A. Environmental Microbiology. Volume 17, Issue 6, 2015, pages 1950–1962, June 2015. DOI: 10.1111/1462-2920.12468.

Daniel Ritter, David Vinson, Elliott Barnhart, Denise M. Akob, Matthew W. Fields, Al B. Cunningham, William Orem, Jennifer C. McIntosh. 2015.  Enhanced microbial coalbed methane generation: A review of research, commercial activity, and remaining challenges.  International Journal of Coal Geology. Volume 146, 1 July 2015, Pages 28–41. DOI 10.1016/j.coal.2015.04.013.

Igor A. Schepetkin, Svetlana V. Kushnarenko, Gulmira Özek, Liliya N. Kirpotina, Gulzhakhan A. Utegenova, Yuriy A. Kotukhov, Alevtina N. Danilova, Temel Özek, K. Hüsnü Can Başer, and Mark T. Quinn. 2015.  Inhibition of Human Neutrophil Responses by the Essential Oil of Artemisia kotuchovii and Its Constituents.  Journal of Agriculture and Food Chemistry.  2015, 63 (20), pp 4999–5007. DOI: 10.1021/acs.jafc.5b01307.  

Michel Laurin, Aurore Canoville, Mikayla Struble, Chris Organ, Vivian de Buffrénil.  2015.  Early genome size increase in urodeles.  Comptes Rendus Palevol. online 26 March 2015, In Press. DOI: 10.1016/j.crpv.2014.12.006.  

Andres Gomez, Klara Petrzelkova, Carl J. Yeoman, Klara Vlckova, Jakub Mrázek, Ingrid Koppova, Franck Carbonero, Alexander Ulanov, David Modry, Angelique Todd, Manolito Torralba, Karen E. Nelson, H. Rex Gaskins, Brenda Wilson, Rebecca M. Stumpf, Bryan A. White and Steven R. Leigh.  2015.  Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology. Molecular Ecology. Volume 24, Issue 10, pages 2551–2565, May 2015.  DOI: 10.1111/mec.13181.

Amy C. Graham, Rachel M. Temple and Joshua J. Obar.  2015.  Mast cells and influenza A virus: association with allergic responses and beyond.  Frontiers in Immunology.  2015 May 18;6:238.  DOI: 10.3389/fimmu.2015.00238.  

Philip S. Stewart, Michael J. Franklin, Kerry S. Williamson, James P. Folsom, Laura Boegli and Garth A. James.  2015.  Contribution of Stress Responses to Antibiotic Tolerance in Pseudomonas aeruginosa Biofilms.  Antimicrobial Agents and Chemotherapy. July 2015, vol. 59, no. 7, 3838-3847.  DOI: 10.1128/AAC.00433-15.  

Matthew R. Urschela,, Michael D. Kubo, Tori M. Hoehler, John W. Peters, and Eric S. Boyd, A.M. Spormann, Editor. 2015.  Carbon Source Preference in Chemosynthetic Hot Spring Communities.  Applied and Environmental Microbiology.  June 2015 vol. 81 no. 11 3834-3847.  DOI: 10.1128/AEM.00511-15.

Dean Y. Maeda, , , Angela M. Peck, Aaron D. Schuler, Mark T. Quinn, Liliya N. Kirpotina, Winston N. Wicomb, Richard L. Auten, Rambabu Gundla, John A. Zebala.  2015.  Boronic acid-containing CXCR1/2 antagonists: Optimization of metabolic stability, in vivo evaluation, and a proposed receptor binding model. Bioorganic &Medicinal Chemistry Letters.  Volume 25, Issue 11, 1 June 2015, Pages 2280–2284.  DOI: 10.1016/j.bmcl.2015.04.041.

Egan J Lohman, Robert D Gardner, Todd Pedersen, Brent M Peyton, Keith E Cooksey and Robin Gerlach.   Optimized inorganic carbon regime for enhanced growth and lipid accumulation in Chlorella vulgaris.  Biotechnology for Biofuels.  2015 Jun 11;8:82.  DOI: 10.1186/s13068-015-0265-4.

Eric S. Boyd.  2015.  Archaea on the move.  Environmental Microbiology Reports.  Volume 7, Issue 3, June 2015, Pages 385–387.  DOI: 10.1111/1758-2229.12281.

Laura M Brutscher, Katie F Daughenbaugh, Michelle L Flenniken.  2015.  Antiviral defense mechanisms in honey bees.  Current Opinion in Insect Science.   Volume 10, August 2015, Pages 71–82.  DOI: 10.1016/j.cois.2015.04.016.

Igor A. Schepetkin, Liliya N. Kirpotina, Deepa Hammaker, Irina Kochetkova, Andrei I. Khlebnikov, Sergey A. Lyakhov, Gary S. Firestein, and Mark T. Quinn.  2015.  Anti-Inflammatory Effects and Joint Protection in Collagen-Induced Arthritis after Treatment with IQ-1S, a Selective c-Jun N-Terminal Kinase Inhibitor.  The Journal of Pharmacology and Experimental Therapeutics.  June 2015 vol. 353 no. 3 505-516.  DOI: 10.1124/jpet.114.220251.

Ryan N. Jackson, Blake Wiedenheft.  2015.  A Conserved Structural Chassis for Mounting Versatile CRISPR RNA-Guided Immune Responses.  Molecular Cell.  Volume 58, Issue 5, 4 June 2015, Pages 722–728. DOI: 10.1016/j.molcel.2015.05.023.   

Liu M, Feng W, Zhu H, Lei. B. 2015. A Neutralizing Monoclonal IgG1 Antibody of Platelet-Activating Factor Acetylhydrolase SsE Protects Mice against Lethal Subcutaneous Group A Streptococcus Infection. Infect Immunity. 2015 Oct; Vol. 83(10) :2796-805. DOI: 10.1128/IAI.00073-15. 

R. Kratchmarov, L. W. Enquist and M. P. Taylor. 2015. Us9-Independent Axonal Sorting and Transport of the Pseudorabies Virus Glycoprotein gM. Journal of Virology. June 2015; vol. 89 no. 12 6511-6514.

Igor A. Schepetkin, Liliya N. Kirpotina, Deepa Hammaker, Irina Kochetkova, Andrei I. Khlebnikov, Sergey A. Lyakhov, Gary S. Firestein, and Mark T. Quinn. 2015. Anti-Inflammatory Effects and Joint Protection in Collagen-Induced Arthritis after Treatment with IQ-1S, a Selective c-Jun N-Terminal Kinase Inhibitor. The Journal of Pharmacology and Experimental Therapeutics, June 2015; 353(3):505-16. DOI: 10.1124/jpet. 114.220251. 

Matthew P. Taylor, Lynn W. Enquist. 2015. Axonal Spread of Neuroinvasive Viral Infections. Trends in Mirobiology, May 2015; Volume 23, Issue 5, 283-288.

J. Telling, E. S. Boyd, N. Bone, E. L. Jones, M. Tranter, J. W. MacFarlane, P. G. Martin, J. L. Wadham, G. Lamarche-Gagnon, M. L. Skidmore, T. L. Hamilton, E. Hill, M. Jackson & D. A. Hodgson. Rock comminution as a source of hydrogen for subglacial ecosystems. Nature Geoscience.February 2015. DOI: 10.1038/ngeo2533.

Katherine R. Amato, Steven R. Leigh, Angela Kent, Roderick I. Mackie, Carl J. Yeoman, Rebecca M. Stumpf, Brenda A. Wilson, Karen E. Nelson, Bryan A. White, Paul A. Garber. The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra).  Microbial Ecology, February 2015, Volume 69(2): 434-443. DOI: 10.1007/s00248-014-0554-7. Epub 2014 Dec 19.

Alayna K. Caffrey, Margaret M. Lehmann, Julianne M. Zickovich, Vanessa Espinosa, Kelly M. Shepardson, Christopher P. Watschke, Kimberly M. Hilmer, Arsa Thammahong, Bridget M. Barker, Amariliz Rivera, Robert A. Cramer, Joshua J. Obar.  IL-1α Signaling Is Critical for Leukocyte Recruitment after Pulmonary Aspergillus fumigatus Challenge. PLoS Pathogens, January 2015, 28;11(1):e1004625. DOI: 10.1371/journal.ppat.1004625. eCollection 2015 Jan.

Maureen Kesaano, Robert D. Gardner, Karen Moll, Ellen Lauchnor, Robin Gerlach, Brent M. Peyton, Ronald C. Sims. 2014. Dissolved inorganic carbon enhanced growth, nutrient uptake, and lipid accumulation in wastewater grown microalgal biofilms. Bioresource Technology, March 2015, 180: 7-15; DOI:10.1016/j.biortech.2014.12.082.

Michael E. Kurczy, Zheng-Jiang Zhu, Julijana Ivanisevic, Adam M. Schuyler, Kush Lalwani, Antonio F. Santidrian, John M. David, Anand Giddabasappa, Amanda J. Roberts, Hernando J. Olivos, Peter J. O’Brien, Lauren Franco, Matthew W. Fields, Liliana P. Paris, Martin Friedlander, Caroline H. Johnson, Adrian A. Epstein, Howard E. Gendelman, Malcolm R. Wood, Brunhilde H. Felding, Gary J. Patti, Mary E. Spilker & Gary Siuzdak. Comprehensive bioimaging with fluorinated nanoparticles using breathable liquids. Nature Communications, January 2015, 6: 5998; DOI: 10.1038/ncomms6998.

Jodi F. Hedges, Angela M Mitchell, Kerri Jones, Emily Kimmel, Andrew G Ramstead, Deann T Snyder, Mark A. Jutila. 2015. Amphotericin B stimulates γδ T and NK cells, and enhances protection from Salmonella infection. Innate Immunity, January 2015; DOI:10.1177/1753425914567692. (Epub ahead of print)

Sofi Eriksson, Justin R. Prigge, Emily Talago, Elias S.J. Arner and Edward E. Schmidt. 2015. Dietary methionine can sustain cytosolic redox homeostasis in the mouse liver. Nature Communications, March 2015; DOI: 10.1038/ncomms7479.

Giovanna Leoni, Jeannie Gripentrog, Connie Lord, Marcia Riesselman, Ronen Sumagin, Charles A. Parkos, Asma Nusrat and Algirdas J. Jesaitis. 2014. Human neutrophil formyl peptide receptor phosphorylation and the mucosal inflammatory response. Journal of Leukocyte Biology, January 2015, 97:87-101; DOI: 10.1189/jlb.4A0314-153R.

2014

Kristen A. Brileya, Laura B. Camilleri, Grant m. Zane, Judy D. Wall and Matthew Fields.  2015. Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy. Frontiers in Microbiology, December 2014, 5: 693, doi: 10.3389/fmicb.2014.00693

Keith E. Cooksey. 2014. Regulation of the initial events in microalgal triacylglycerol (TAG) synthesis: hypotheses. Journal of Applied Phycology, December 2014, vol. 26 no. 6, doi 10.10007/s10811-014-0461-9. 

Raina K. Plowright, Peggy Eby, Peter J. Hudson, Ina L. Smith, David Westcott, Wayne L. Bryden, Deborah Middleton, Peter A. Reid,Rosemary A. McFarlane, Gerardo Martin, Gary M. Tabor, Lee F. Skerratt, Dale L.Anderson, Gary Crameri, David Quammen, David Jordan, Paul Freeman, Lin-Fa Wang, Jonathan H. Epstein, Glenn A. Marsh, Nina Y. Kung, Hamish McCallum. 2014. Ecological dynamics of emerging bat virus spillover. Proceedings of the Royal Society B: Biological Sciences. 2015 282 20142124; DOI: 10.1098/rspb.2014.2124.Published 12 November 2014.

Dawoon Chung, Bridget M. Barker, Charles C. Carey, Brittney Merriman, Ernst R. Werner, Beatrix E. Lechner,  Sourabh Dhingra, Chao Cheng, Wenjie Xu, Sara J. Blosser, Kengo Morohashi, Aurélien Mazurie, Thomas K. Mitchell, Hubertus Haas, Aaron P. Mitchell, Robert A. Cramer. 2014. ChIP-seq and In Vivo Transcriptome Analyses of the Aspergillus fumigatus SREBP SrbA Reveals a New Regulator of the Fungal Hypoxia Response and Virulence. PLOS Pathogens. DOI: 10.1371/journal.ppat.1004487.  Published 06 Nov 2014.

Kezia R. Manlove, E. Frances Cassirer, Paul C. Cross, Raina K. Plowright, Peter J. Hudson. 2014. Cost and benefits of group living with disease: a case study of pneumonia in bighorn lambs (Ovis canadensis). Proceeding of the Royal Society B: Biological Sciences. 2014 281 20142331; DOI: 10.1098/rspb.2014.2331. Published 5 November 2014.

Maeda, D.Y., Peck, A.M., Schuler, A.D., Quinn, M.T., Kirpotina, L.N., Wicomb, W.N., Fan, G.H., and Zebala, J.A. (2014) Discovery of 2-[5-(4-Fluoro-phenylcarbamoyl)-pyridin-2-ylsulfanylmethyl]-phenylboronic acid (SX-517): A Non-Competitive Boronic Acid Antagonist of CXCR1 and CXCR2. J. Med. Chem., In Press.

Deann T. Snyder, Amanda Robison, Sharon Kemoli, Emily Kimmel, Jeff Holderness, Mark A. Jutila, and Jodi F. Hedges. 2014. Oral delivery of oligomeric procyanidins in Apple Poly® enhances type I IFN responses in vivo. Journal of Leukocyte Biology. DOI: 10.1189/jlb.0513296

Schepetkin, I.A., Kirpotine, L.N., Khlebnikov, A.I., Cheng, N., Ye, R.D. and Quinn, M.T. 2014. Antagonism of Human Formyl Peptide Receptor 1 (FPR1) by Chromones and Related Isoflavones. Biochemical Pharmacology, in press.

Eric S. Boyd, Trinity L. Hamilton, Jeff R. Havig, Mark L. Skidmore and Everett L. Shock. 2014. Chemolithotrophic Primary Production in a Subglacial Ecosystem. Applied Environmental Microbiology October 2014 80:6146-6153; published ahead of print 1 August 2014, DOI: 10.1128/AEM.01956-14

Ryan N. Jackson, Sarah M. Golden, Paul B.G. van Erp, Joshua Carter, Edze r. Westra, Stan J. J. Brouns, John van der Oost, Thomas C. Terwilliger, Randy J. Read and Blake Wiedenheft. 2014. Crystal structure of the CRISPR RNA-guided surveillance complex form Escherichia coli. Science 19 September 2014; 1473-1479. Publish online 7 August 2014. DOI: 10.1126/science.1256328.

Caralyn E. Flack, Oliwia W. Zurek, Delisha D. Meishery, Kyler B. Pallister, Cheryl L. Malone, Alexander R. Horswill, and Jovanka M. Voyich. 2014. Differential regulation of staphylococcal virulence by the sensor kinase SaeS in response to neutrophil-derived stimuli. Proceedings of the National Academy of Sciences. DOI: 10.1073/pnas.1322125111

Eric S. Boyd, Gerrit J. Schut, Michael W.W. Adams and John Peters. 2014. Hydrogen Metabolism and the Evolution of Biological Respiration. Microbe "Feature Article" 9:361.

Julianne M. Zickovich, Susan I. Meyer, Hideo Yagita, Joshua J. Obar. 2014. Agonistic Anti-CD40 Enhances the CD8+ T Cell Response during Vesicular Stomatitis Virus Infection. PLOS ONE 10.1371.

Zhu H, Li D, Liu M, Copié V and Lei B. Non-heme-binding domains and segments of the Staphylococcus aureus IsdB protein critically contribute to the kinetics and equilibrium of heme acquisition from methemoglobin. PLoS One. 2014 Jun 24;9(6):e100744. DOI: 10.1371/journal.pone.0100744. eCollection 2014.

Fonner BA, Tripet BP, Eilers BJ, Stanisich J, Sullivan-Springhetti RK, Moore R, Liu M. and Lei B, Copié V. Solution structure and molecular determinants of hemoglobin binding of the first NEAT domain of IsdB in Staphylococcus aureus. Biochemistry. 2014 Jun 24;53(24):3922-33. DOI: 10.1021/bi5005188. Epub 2014 Jun 11.

Li J, Liu G, Feng W, Zhou Y, Liu M, Wiley JA and Lei B. Neutrophils select hypervirulent CovRS mutants of M1T1 group A Streptococcus during subcutaneous infection of mice. Infect Immun. 2014 Apr; 82(4):1579-90. DOI: 10.1128/IAI.01458-13. Epub 2014 Jan 22.

Boyd, E.S., K. Thomas, Y. Dai, J.M. Boyd, and F.W. Outten.  2014. The interplay between oxygen and Fe-S cluster biogenesis: Insights from the Suf pathway.  Biochem. 53:5834–5847. DOI: 10.1021/bi500488r.

Boyd*, E.S., G. Schut, M.W.W. Adams, and J.W. Peters.  2014. Hydrogen metabolism and the evolution of respiration.  Microbe.  9:361-367. *Corresponding author.

Jia, J., C.L. Zhang, W. Xie, F. Li, J. Wang, S. Wang, H. Dong, W. Li, and E.S. Boyd*.^. 2014. Differential temperature and pH controls on the abundance and composition of H-GDGTs in terrestrial hot springs.  Org. Geochem.  75: 109–121.  DOI: 10.1016/j.orggeochem.2014.06.009.  *co-corresponding author.

Alsop, E.A., E.S. Boyd, and J.A. Raymond.  2014. Geochemical constraints on biological evolution: Merging metagenomics and geochemistry to understand how environment shapes biodiversity.  BMC Ecology.  14:16.  DOI: 10.1186/1472-6785-14-16.

Schepetkin, I.A., Khlebnikov, A.I., Giovannoni, M.P., Kirpotina, L.N., Cilibrizzi, A., and Quinn, M.T. (2014) Development of Small Molecule Non-peptide Formyl Peptide Receptor (FPR) Ligands and Molecular Modeling of Their Recognition. Curr. Med. Chem., 21: 1478-504.

Munnamalai, V., Weaver, C.J., Weisheit, C.E., Venkatraman, P., Agim, Z.S., Quinn, M.T. and Suter, D.M. (2014) Bidirectional interactions between NOX2-type NADPH oxidase and the F-actin cytoskeleton in neuronal growth cones. J. Neurochem. 130: 526-540.

Yu, P., Han, W., Villar, V.A.M., Yu, Y., Lu, Q., Lee, H., Li, F., Quinn, M.T., Gildea, J.J., Felder, R.A., and Jose, P.A. (2014) Unique role of NADPH oxidase 5 in oxidative stress in human renal proximal tubule cells.Redox Biol. 2: 570-579.

Marcia Riesselman, Algirdas J. Jesaitis. 2014. Affinity purification and reconstitution of human phagocyte flavocytochrome B for detection of conformational dynamics in the membrane. Methods Molecular Biology: Neutrophil Methods and Protocols, vol. 1124, 2014, pp 413-426.

Darius Cepauskas, Inga Miliute, Grazina Staniene, Dalia Gelvonauskiene, Vidmantas Stanys, Algirdas J. Jesaitis, Danas Baniulis_.Characterization of apple NADPH oxidase genes and their expression associated with oxidative stress in shoot culture in vitro. Plant cell, Tissue and Organ Culture. March 2016, Volume 124, Issue 3, pp 621-633. DOI: 10.1007/s11240-015-0920-2.

Tisza A. S. Bell, Bharath Prithiviraj, Brad D. Wahlen, Matthew W. Fields, Brent M. Peyton. A Lipid-Accumulating Alga Maintains Growth in Outdoor, Alkaliphilic Raceway Pond with Mixed Microbial Communities. Frontiers in Microbiology. 7 January 2016. DOI: 10.3389/fmicb.2015.01480

Zoë R. Harrold, Mark L. Skidmore, Trinity L. Hamilton, Libby Desch,Kirina Amada, Will van Gelder, Kevin Glover, Eric E. Roden,Eric S. Boyd.Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph. Applied and Environmental Microbiology. March 2016, Volume 82, Number 5. DOI: 10.1128/AEM.03398-15.